Pairwise Alignments

Query, 566 a.a., flagellar M-ring protein from Agrobacterium fabrum C58

Subject, 273 a.a., type III secretion protein from Pseudomonas simiae WCS417

 Score = 45.8 bits (107), Expect = 2e-09
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 57  LYVGLEKSDLNKISIALAESGLDFQVGTDGSSLQVPVGLTSKARLL--LAERGLPDSANA 114
           L+  L + + N++   LA+  +          + V V  T  AR +  L   GLP +A  
Sbjct: 26  LHRQLTEQEANEVVAELADKHIRATKVPAKDGVIVVVNATEIARAVRTLEAVGLPRAART 85

Query: 115 GY-ELFDNVGSLGLTSFMQEVTRVRALEGEIGRSIQQIDGVSAARVHIVLPDVGNFRRGE 173
                F   G +  T   +    + AL  E+  ++  IDGV  ARVH+VLP+        
Sbjct: 86  TLGNTFRKEGVIS-TPLEERARYIYALSQELETTLSNIDGVIVARVHVVLPERVAPGEPV 144

Query: 174 QKPTASVMIRASASAGRKA-SASIRHLVASAVPGLEVDDVTLLDSTGQL 221
           Q  +ASV I+        +  A +R +VAS++PG+     T +D++ +L
Sbjct: 145 QPASASVFIKHDPRLDPDSIRARVRRMVASSLPGM----ATAVDNSQKL 189