Pairwise Alignments

Query, 598 a.a., acyl-CoA dehydrogenase from Agrobacterium fabrum C58

Subject, 601 a.a., Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] from Pseudomonas sp. S08-1

 Score =  633 bits (1632), Expect = 0.0
 Identities = 324/599 (54%), Positives = 411/599 (68%), Gaps = 3/599 (0%)

Query: 1   MPVYKAPVKDTLFILNDVLGLE-RYNNLPGFEDATPDMIEAITGEAAKLAEERLFPLNLS 59
           MP YKAP++D  F+ +++LG E  Y +LPG +DATPDM+ AI  E AK  E+ + PLN  
Sbjct: 1   MPEYKAPLRDIRFVRDELLGYEAHYQSLPGCQDATPDMVSAILEEGAKFCEQVIAPLNRV 60

Query: 60  GDQQGCKRADDGSVSVPDGFKAAYDAYCEGGWIGLAVPSEFGGQGLPYTLHAAIGEYMSS 119
           GD +GC  ++ G V  P GFK AY  + EGGW  LA   + GGQGLP +L  A+ E +  
Sbjct: 61  GDLEGCTWSESG-VKTPTGFKEAYQQFVEGGWPSLAHHVDHGGQGLPESLGLALSEMVGE 119

Query: 120 ANLSLMMYPGLTQGAIAAVLVHGTQEQKETYLPKMVEGTWSGTMNLTEPHCGTDLGLLRT 179
           AN S  MYPGL+ GA+  +  HGT EQK TYL K+V G W+GTM LTEPHCGTDLG+LRT
Sbjct: 120 ANWSWGMYPGLSHGAMNTIEAHGTDEQKHTYLTKLVSGEWTGTMCLTEPHCGTDLGMLRT 179

Query: 180 KAVPQGDGSYKISGQKIFISAGEHSMTDNIVHLVIARIEGAPEGTKGISLFIVPKFLVKE 239
           KA PQ DGSYK+SG KIFISAGEH M DNIVH+V+AR+  AP+GTKGISLFIVPKF VK 
Sbjct: 180 KAEPQADGSYKVSGTKIFISAGEHDMVDNIVHIVLARLPDAPQGTKGISLFIVPKFNVKA 239

Query: 240 DGTLGERNGVTCGAIEHKMGIHGNATCVMNYDDATGYLLGAENKGLSAMFVMMNEARLGV 299
           DG++GERN V+CG+IEHKMGIHGNATCVMN+D ATGYL+G  NKGL+ MF  MN ARLG 
Sbjct: 240 DGSVGERNAVSCGSIEHKMGIHGNATCVMNFDGATGYLIGPANKGLNCMFTFMNTARLGT 299

Query: 300 GLQGLSVGEIAYQNAVEYARDRIQGRSLSGAKFPDKKADPIIVHPDIRRTLMTIKAYNEA 359
            LQGL+  EIA+Q  ++YAR+R+Q RSL+G K PDK ADPIIVHPD+RR L+T+KA+ E 
Sbjct: 300 ALQGLAHAEIAFQGGIKYARERLQMRSLTGPKAPDKAADPIIVHPDVRRMLLTMKAFAEG 359

Query: 360 GRAFLLWTALQSDIAHRAADEKQRQAADDLLGLVTPILKGVLTDKGFDHAVMAQQVFGGH 419
            RA + +TA Q DI   + +E++++AAD +L  +TPI K  +T+ GF+ A    Q++GGH
Sbjct: 360 NRAMVYFTAKQVDIVKYSQNEEEKKAADAMLAFLTPIAKAFMTEVGFEAANHGVQIYGGH 419

Query: 420 GYIEEHGMSQYVRDARITMIYEGANGIQALDLVGRKLGMNGGRAVMALFKEIGDFCEENR 479
           G+I E GM Q VRD+RI+ +YEG  G+QALDL+GRK+ M  G A+    K +  FC+ N 
Sbjct: 420 GFIAEWGMEQNVRDSRISCLYEGTTGVQALDLLGRKVLMTQGEALKGFTKIVHKFCQANE 479

Query: 480 ADEKLSLYTKGLKKGLNDLQAATMWFMQNAMAKPDNAGAGSTDYMHLFGIVVLGYMQALM 539
            +E +      L +   +    TM     AM   +  GA S DY+   G   L Y  A M
Sbjct: 480 GNEAIKGLVAPLAQLNKEWGDLTMKVGMAAMKDREEVGAASVDYLMYSGYACLAYFWADM 539

Query: 540 AKAASEALAAGSTSDEDFLKTKLVTAKFYMERIMPETALRKARIETGADTMMELAAEAF 598
           A+ A+E LAAG T DE F K KL TA+FY ERI+P T    A + +GA  +ME+  E F
Sbjct: 540 ARLAAEKLAAG-TEDEAFYKAKLQTARFYFERILPRTRTHVATMLSGASNLMEMDEEHF 597