Pairwise Alignments

Query, 598 a.a., acyl-CoA dehydrogenase from Agrobacterium fabrum C58

Subject, 592 a.a., Acyl-CoA dehydrogenase 2 [fadN-fadA-fadE operon] from Pseudomonas sp. S08-1

 Score =  577 bits (1488), Expect = e-169
 Identities = 292/600 (48%), Positives = 398/600 (66%), Gaps = 10/600 (1%)

Query: 1   MPVYKAPVKDTLFILNDVLGLER-YNNLPGFEDATP-DMIEAITGEAAKLAEERLFPLNL 58
           M  YKAP++D  F+LN+V  + + +  LPG  +    D   AI  EA K+    + PLN 
Sbjct: 1   MADYKAPLRDMRFVLNEVFEVSKLWAQLPGLAEVVDEDTAAAILEEAGKVTGGVIAPLNR 60

Query: 59  SGDQQGCKRADDGSVSVPDGFKAAYDAYCEGGWIGLAVPSEFGGQGLPYTLHAAIGEYMS 118
           SGD++GC   + G V  P GF  AY  Y EGGW+G+    EFGG G+P  + A + E ++
Sbjct: 61  SGDEEGCSWTN-GVVKTPAGFPEAYQTYAEGGWVGVGGAPEFGGMGMPKVIGAQVEEMVN 119

Query: 119 SANLSLMMYPGLTQGAIAAVLVHGTQEQKETYLPKMVEGTWSGTMNLTEPHCGTDLGLLR 178
           SANLS  +YP LT GA  ++L H ++E K+ YLP M  G W+G+M LTEPH GTDLG++R
Sbjct: 120 SANLSFGLYPMLTAGACLSILNHASEELKQQYLPNMYSGVWAGSMCLTEPHAGTDLGIIR 179

Query: 179 TKAVPQGDGSYKISGQKIFISAGEHSMTDNIVHLVIARIEGAPEGTKGISLFIVPKFLVK 238
           TKA PQ DGSYKISG KIFI+ GEH +T+NIVHLV+A++  AP G KGISLF+VPK +V 
Sbjct: 180 TKAEPQADGSYKISGTKIFITGGEHDLTENIVHLVLAKLPDAPAGPKGISLFLVPKVMVN 239

Query: 239 EDGTLGERNGVTCGAIEHKMGIHGNATCVMNYDDATGYLLGAENKGLSAMFVMMNEARLG 298
            DG+LGE+N ++CG+IEHKMGI  +ATCVMN+D ATG+++   NKGL+AMF MMN  RLG
Sbjct: 240 ADGSLGEKNSLSCGSIEHKMGIKASATCVMNFDGATGWIVDEPNKGLNAMFTMMNYERLG 299

Query: 299 VGLQGLSVGEIAYQNAVEYARDRIQGRSLSGAKFPDKKADPIIVHPDIRRTLMTIKAYNE 358
           VG+QGL++GE +YQ+A+EYARDRIQ R+ +G    DK ADPIIVHPD+RR L+T+KA NE
Sbjct: 300 VGIQGLALGERSYQSAIEYARDRIQSRAPTGPVNKDKAADPIIVHPDVRRMLLTMKALNE 359

Query: 359 AGRAFLLWTALQSDIAHRAADEKQRQAADDLLGLVTPILKGVLTDKGFDHAVMAQQVFGG 418
            GRAF  + A+Q D A  + D+  R+ A++L+ L+TP+ K  LTD G +  +  QQ+FGG
Sbjct: 360 GGRAFSSYVAMQLDTAKYSEDKDTRKRAEELVALLTPVAKAFLTDMGLETTIHGQQIFGG 419

Query: 419 HGYIEEHGMSQYVRDARITMIYEGANGIQALDLVGRKLGMNGGRAVMALFKEIGDFCEEN 478
           HG++ E G  Q +RD RIT IYEG NGIQ+LDL+GRK+  +GG        E+  F    
Sbjct: 420 HGFVREWGQEQLIRDCRITQIYEGTNGIQSLDLMGRKIVGSGGSFYKHFSDEVKAFI--G 477

Query: 479 RADEKLSLYTKGLKKGLNDLQAATMWFMQNAMAKPDNAGAGSTDYMHLFGIVVLGYMQAL 538
            AD  L  +T+ LK  + +L   T W ++ A A P+  GA S +Y+ +FG     Y+ AL
Sbjct: 478 SADASLGEFTEPLKAAIANLDELTAWVIEQAKANPNEIGAASVEYLQVFGYTAYAYVWAL 537

Query: 539 MAKAASEALAAGSTSDEDFLKTKLVTAKFYMERIMPETALRKARIETGADTMMELAAEAF 598
           MA+A     A     D++F  +KL TA+F+  R++P      A ++ G++++  L A  F
Sbjct: 538 MARA-----ALAKQGDDEFYVSKLGTARFFFARLLPRIHSLTASVKAGSESLYLLDAAQF 592