Pairwise Alignments

Query, 386 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 347 a.a., Pyocin R2_PP, tail formation from Pseudomonas putida KT2440

 Score =  121 bits (303), Expect = 3e-32
 Identities = 96/345 (27%), Positives = 167/345 (48%), Gaps = 17/345 (4%)

Query: 1   MKPRVEVSIDGVPVAGHFYERLLSLTVTDEEGMKSDTVDIELNDGPPNFLAIPRKGAIIS 60
           MKP  ++  DG  +     +RLL L  +D+ GM+SD  ++ ++D     +A+P +G+ + 
Sbjct: 1   MKPTYQIVADGSDITALINDRLLLLRTSDKPGMESDEFELRIDD-RDQAVALPARGSNVV 59

Query: 61  VKMGF-GDDLVPKGVFTADKVNLDCLPYKMSISGKAADLRSGKLKERQERSWDKSKLGDI 119
           V MG+ G  L   G +T D+V L   P  + I GKA+D+R G  K  +  SW+   L  I
Sbjct: 60  VMMGYEGQGLTRLGAYTVDEVELSGPPDTIVIRGKASDMR-GSGKTVRSGSWENVPLSQI 118

Query: 120 LSQIASESGLTPAVDDDLADFEYDWLAQQDESNINFLRRLAERHNGLFAVKQRRLIFTRL 179
           + +IA  +G   +      D + + + Q++ES+ NF+ RLA++++    V + +L+    
Sbjct: 119 VGEIAKRNGWEVSCP---VDTKVERVDQRNESDYNFVTRLAKQYDCTAKVAESKLLVMPR 175

Query: 180 GSGLSASGAPLGSIILTPEKIKVGSLKVEINDRTKYSKVVAYYQD--SDKAERVEIDADA 237
             G S +G  L   ++T  K  V   +  + DR     V   +QD  + K + VE+  D 
Sbjct: 176 QGGQSTTGKALA--VVTINKTYVSRYQFRLGDRNSQKAVKTQHQDPKTGKLQVVELANDE 233

Query: 238 DADG-DSVYRLPEPYASPAEADKAAQAKAKELQRGEGSVSVTVIGDAGIDAGLPLLFADV 296
             DG   V+     Y +   A +AA+A+     R    V + + G   + A   +     
Sbjct: 234 SPDGLPPVHTDRHVYPNKTSAQQAAKARLAAFNRSTAGVRLEMPGRTDLFAERSINAQGF 293

Query: 297 RPGVDGVPYIIKTAKTSYTKTG-ALEVAVSGRLYDGKSATEKSAG 340
           +PG+DG  Y++   +  +T++G    V  +G    GK    K++G
Sbjct: 294 KPGLDG-EYLVDGVEQVFTQSGWTTTVECNG----GKKGKAKASG 333