Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 863 a.a., DNA mismatch repair protein MutS from Pseudomonas simiae WCS417

 Score =  555 bits (1431), Expect = e-162
 Identities = 348/886 (39%), Positives = 503/886 (56%), Gaps = 42/886 (4%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+QY  +K  +P  L+FYRMGDFYE+F++DA +A++ L ITLT RGQ  G  IPMCG+P
Sbjct: 14  MMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGQSIPMCGIP 73

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            H+ + YL KL+  G  V +CEQI DPA      SK  V+R VVR++TPGT+++E LL  
Sbjct: 74  YHSLEGYLVKLVKLGESVVICEQIGDPAT-----SKGPVERQVVRIITPGTVSDEALLDE 128

Query: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETT-LTRLLADIWRIDPRELIVADS 179
              N + A+       E  F L+ +DI++G F + E      LLA++ RI+P EL++ D 
Sbjct: 129 RRDNLIAAVL----GDERLFGLSVLDITSGNFSVLEIKGWENLLAELERINPVELLIPDD 184

Query: 180 LFHDEELRPVFDVLGRVAVPQPAILFDSAVAEGRIARYFNVSTLDGFGTFS-RVEMAAAA 238
              D           R A  +    F+   A   + + F+V  L GFG  +  + + AA 
Sbjct: 185 WPKDLPAEK-----RRGAKRRAPWDFERDSALKSLCQQFSVQDLKGFGCETLTLAIGAAG 239

Query: 239 AAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNRT 298
             + Y ++TQ    P L +   E    T+ +D A+R NLEL   L+G RD +L   ++R 
Sbjct: 240 CLLGYAKETQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRDNTLQSVVDRC 299

Query: 299 VTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSRL 358
            T  G+RLL   L  PL D   + AR  ++  L+D     + L+  LK + D+ R L+R+
Sbjct: 300 QTAMGSRLLTRWLNRPLRDLSVLQARQTSITCLLDGYRF-EKLQPQLKEIGDIERILARI 358

Query: 359 ALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKALPGA---LEAMLGSM 415
            L    PRDL  +R  L +  ++   +     P      L+ L    G    L A+LG  
Sbjct: 359 GLRNARPRDLARLRDALAALPQLQAAMTELDTPH-----LQQLAVTAGTYPELAALLGKA 413

Query: 416 LADDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNV 475
           + D+ P + RDGG L+ G + ELDE++AL + + + +  L+ +    TG+ +LK+ +N V
Sbjct: 414 IIDNPPAIIRDGGVLKTGYDSELDELQALSENAGQFLIDLEAREKARTGLANLKVGYNRV 473

Query: 476 LGYFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTME 535
            GYFIE+ +  A+       A   +  RQT+ GA RF T EL + E +  +A + AL  E
Sbjct: 474 HGYFIELPSKQAE------SAPIDYQRRQTLKGAERFITPELKEFEDKALSAKSRALARE 527

Query: 536 LEAFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGR 595
              +E ++E ++ Q   ++  A ALA +DV S+LA  A       P   +     I  GR
Sbjct: 528 KMLYENLLEDLISQLAPLQDTASALAELDVLSNLAERALNLDLNCPRFVSEPCMRIVQGR 587

Query: 596 HPVVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQ 655
           HPVVEQ L      PF+AN+  L       +  + ++TGPNMGGKST++RQ ALI +LA 
Sbjct: 588 HPVVEQVLTT----PFVANDLSLD-----DDTRMLVITGPNMGGKSTYMRQTALIVLLAH 638

Query: 656 IGSFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEI 715
           IGSFVPA +  + +VDR+F+R+G+SDDLA GRSTFMVEM ETA IL+ AT+RSLV++DE+
Sbjct: 639 IGSFVPAASCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEV 698

Query: 716 GRGTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGD 775
           GRGT+TFDGLS+AWAA E L  + R   LFATH+ ELTVL E    ++N  +   E    
Sbjct: 699 GRGTSTFDGLSLAWAAAERLAHL-RAYTLFATHYFELTVLPESEPLVANVHLNATEHNER 757

Query: 776 VIFLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLF 835
           ++FLH V PG A +SYG+ VA+LAG+P  V+ RARE L++LE     +  +         
Sbjct: 758 IVFLHHVLPGPASQSYGLAVAQLAGVPNDVITRAREHLSRLETTALPHETAVASPAKASS 817

Query: 836 QIAVRREETRKAG-PSKVEEALKSFNPDEMTPREALDALYALKKEL 880
           + +   +    A  P  V + L   + D++TPR+AL+ LYALK  +
Sbjct: 818 KPSAPHQSDMFASLPHPVLDELAKLDLDDLTPRKALEMLYALKTRI 863