Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 855 a.a., DNA mismatch repair protein MutS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  555 bits (1431), Expect = e-162
 Identities = 345/880 (39%), Positives = 505/880 (57%), Gaps = 45/880 (5%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+QY+++KA +P  LLFYRMGDFYELF+DDA  AS+ L I+LTKRG   G  IPM G+P
Sbjct: 15  MMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 74

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            HA ++YL KL+ +G  VA+CEQI DPA      SK  V+R VVR+VTPGT+++E LL  
Sbjct: 75  HHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 129

Query: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETT-LTRLLADIWRIDPRELIVADS 179
            + N L A+ +        +  A +DIS+G FRL+E      + A++ R +P EL+ A  
Sbjct: 130 RQDNLLAAIWQDGKG----YGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYA-- 183

Query: 180 LFHDEELRPVFDVLGRVAVPQ-PAILFDSAVAEGRIARYFNVSTLDGFGTFSRVE-MAAA 237
               E+   +  + GR  + + P   F+   A  ++   F    L GFG  +    + AA
Sbjct: 184 ----EDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENASRGLCAA 239

Query: 238 AAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNR 297
              + YV+ TQ    P + +   E    ++ +D ATR NLE+ + L+G  + +L   L+ 
Sbjct: 240 GCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGGVENTLAAVLDC 299

Query: 298 TVTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSR 357
           TVT  G+R+L   L  P+ + + +  R   +  L D VS    L+  L+ V D+ R L+R
Sbjct: 300 TVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDTVS---ELQPVLRQVGDLERILAR 356

Query: 358 LALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKALPGALEAMLGSMLA 417
           LAL    PRDL  +R       ++   L+   +     +ALR        L  +L   + 
Sbjct: 357 LALRTARPRDLARMRHAFQQLPELHAQLE--TVDSAPVQALRKKMGDFAELRDLLERAII 414

Query: 418 DDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLG 477
           D  P+L RDGG +  G + ELDE RAL D +   +  L+++  + TG+ +LK+ +N V G
Sbjct: 415 DAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERERTGLDTLKVGYNAVHG 474

Query: 478 YFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTMELE 537
           Y+I+++ G + +      A   ++ RQT+  A R+   EL + E ++  +  +AL +E +
Sbjct: 475 YYIQISRGQSHL------APINYVRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQ 528

Query: 538 AFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHP 597
            ++ + + ++     ++  A ALA +DV  +LA  A    Y  P         I  GRHP
Sbjct: 529 LYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTDKPGIRITEGRHP 588

Query: 598 VVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIG 657
           VVEQ L      PFIAN  +LS         + ++TGPNMGGKST++RQ ALIA+LA IG
Sbjct: 589 VVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIALLAYIG 639

Query: 658 SFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGR 717
           S+VPA+   IG +DR+F+RVGA+DDLA GRSTFMVEM ETA IL+ AT+ SLV++DEIGR
Sbjct: 640 SYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLMDEIGR 699

Query: 718 GTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVI 777
           GT+T+DGLS+AWA  E+L    +   LFATH+ ELT L EK+  ++N  +   E    + 
Sbjct: 700 GTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIA 759

Query: 778 FLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLFQI 837
           F+H V  GAA +SYG+ VA LAG+P  V++RAR+ L +LE     N A+  +D   +  +
Sbjct: 760 FMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS-PNAAATQVDGTQMSLL 818

Query: 838 AVRREETRKAGPSKVEEALKSFNPDEMTPREALDALYALK 877
           A   E       S   EAL++ +PD +TPR+AL+ +Y LK
Sbjct: 819 AAPEE------TSPAVEALENLDPDSLTPRQALEWIYRLK 852