Pairwise Alignments

Query, 883 a.a., DNA mismatch repair protein, MutS family from Agrobacterium fabrum C58

Subject, 853 a.a., methyl-directed mismatch repair protein from Escherichia coli BL21

 Score =  564 bits (1453), Expect = e-165
 Identities = 348/880 (39%), Positives = 505/880 (57%), Gaps = 45/880 (5%)

Query: 1   MMEQYIEIKANNPGSLLFYRMGDFYELFFDDAVEASRALGITLTKRGQHMGHDIPMCGVP 60
           MM+QY+ +KA +P  LLFYRMGDFYELF+DDA  AS+ L I+LTKRG   G  IPM G+P
Sbjct: 13  MMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAGIP 72

Query: 61  VHAADDYLQKLILRGYRVAVCEQIEDPAEAKKRGSKSVVKRDVVRLVTPGTLTEEKLLSP 120
            HA ++YL KL+ +G  VA+CEQI DPA      SK  V+R VVR+VTPGT+++E LL  
Sbjct: 73  YHAVENYLAKLVNQGESVAICEQIGDPAT-----SKGPVERKVVRIVTPGTISDEALLQE 127

Query: 121 TESNYLMALARIRGSAEAQFALAWIDISTGVFRLAETT-LTRLLADIWRIDPRELIVADS 179
            + N L A+ +        F  A +DIS+G FRL+E      + A++ R +P EL+ A  
Sbjct: 128 RQDNLLAAIWQ----DSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYA-- 181

Query: 180 LFHDEELRPVFDVLGRVAVPQ-PAILFDSAVAEGRIARYFNVSTLDGFGTFSRVE-MAAA 237
               E+   +  + GR  + + P   F+   A  ++   F    L GFG  +    + AA
Sbjct: 182 ----EDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAA 237

Query: 238 AAAVAYVEKTQIAERPPLGAPERESAASTLFIDPATRANLELVKTLSGDRDGSLLHALNR 297
              + Y + TQ    P + +   E    ++ +D ATR NLE+ + L+G  + +L   L+ 
Sbjct: 238 GCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDC 297

Query: 298 TVTGGGARLLAERLMSPLTDPERINARLDAVAYLIDDVSLCDGLRDALKHVADMPRALSR 357
           TVT  G+R+L   L  P+ D   +  R   +  L D  +   GL+  L+ V D+ R L+R
Sbjct: 298 TVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTA---GLQPVLRQVGDLERILAR 354

Query: 358 LALERGGPRDLGAIRQGLVSAEKIAVILDGGLLPDELAKALRDLKALPGALEAMLGSMLA 417
           LAL    PRDL  +R       ++   L+   +     +ALR+       L  +L   + 
Sbjct: 355 LALRTARPRDLARMRHAFQQLPELRAQLE--TVDSAPVQALREKMGEFAELRDLLERAII 412

Query: 418 DDLPLLKRDGGFLREGANPELDEVRALRDQSRRVIAGLQLQYADETGIKSLKIKHNNVLG 477
           D  P+L RDGG +  G N ELDE RAL D +   +  L+++  + TG+ +LK+  N V G
Sbjct: 413 DTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKVGFNAVHG 472

Query: 478 YFIEVTAGNADVMMATDEAKARFIHRQTMAGAMRFTTTELADLESRIANAAAEALTMELE 537
           Y+I+++ G + +      A   ++ RQT+  A R+   EL + E ++  +  +AL +E +
Sbjct: 473 YYIQISRGQSHL------APINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQ 526

Query: 538 AFERMVEAVVQQAEAIKAGALALAVIDVASSLAYLATEQAYCRPIVDASMTFSIKGGRHP 597
            +E + + ++   EA++  A ALA +DV  +LA  A    Y  P         I  GRHP
Sbjct: 527 LYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHP 586

Query: 598 VVEQALRRQSAGPFIANNCDLSAVNGGKNGAIWLLTGPNMGGKSTFLRQNALIAILAQIG 657
           VVEQ L      PFIAN  +LS         + ++TGPNMGGKST++RQ ALIA++A IG
Sbjct: 587 VVEQVLNE----PFIANPLNLSPQR-----RMLIITGPNMGGKSTYMRQTALIALMAYIG 637

Query: 658 SFVPAEAAHIGVVDRLFSRVGASDDLARGRSTFMVEMVETAAILNQATDRSLVILDEIGR 717
           S+VPA+   IG +DR+F+RVGA+DDLA GRSTFMVEM ETA IL+ AT+ SLV++DEIGR
Sbjct: 638 SYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGR 697

Query: 718 GTATFDGLSIAWAAVEHLHEVNRCRGLFATHFHELTVLSEKLGRLSNATMRVKEWEGDVI 777
           GT+T+DGLS+AWA  E+L    +   LFATH+ ELT L EK+  ++N  +   E    + 
Sbjct: 698 GTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIA 757

Query: 778 FLHEVGPGAADRSYGIQVARLAGLPASVVERAREVLTKLEDADRKNPASQLIDDLPLFQI 837
           F+H V  GAA +SYG+ VA LAG+P  V++RAR+ L +LE     N A+  +D   +  +
Sbjct: 758 FMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS-PNAAATQVDGTQMSLL 816

Query: 838 AVRREETRKAGPSKVEEALKSFNPDEMTPREALDALYALK 877
           +V  E       S   EAL++ +PD +TPR+AL+ +Y LK
Sbjct: 817 SVPEE------TSPAVEALENLDPDSLTPRQALEWIYRLK 850