Pairwise Alignments

Query, 235 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 238 a.a., LPS export ABC transporter periplasmic protein LptC from Magnetospirillum magneticum AMB-1

 Score = 47.0 bits (110), Expect = 3e-10
 Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 17/204 (8%)

Query: 42  HSARVKRLKIILPLSAAIISLAFIAVSVIRTWAPEKVSLES------ARIEDGKI---VM 92
           HS  V  +KI LP      +LA + + ++  W P+   LES      A +    +   VM
Sbjct: 33  HSHFVSVMKIALP------ALAVLLLGLVVIW-PKLSQLESGFKLSFANLSPKSVDTLVM 85

Query: 93  EKPAVAGRNEKGIDYSMNADRALQDIANPNLMTLEKVLAAVPVNDSVAQVI-AQEGIFDR 151
           +     G +E    +++ +D A Q   N +L+ L    A          V+ A  G++ +
Sbjct: 86  KNARYFGVDESNRPFAVTSDTATQMPGNQDLIHLVNPKADFTSTSGANIVVDAIAGVYHQ 145

Query: 152 STNTLKMTAPFDINLSNGIQAKFQSADVDLKAGKMSSKEPVSIKTNDGSIVAQSIDIADN 211
           ST  L ++   ++    G +    +A V+L +      EPV      G+I +   +I   
Sbjct: 146 STKVLDLSGGVNLYHDTGYEIHTPTATVELASNTARGFEPVEGHGPQGAIRSTGFEITGK 205

Query: 212 GKTITFSGQVRARIAASNIKNEGK 235
              ITF+G+ +  + A + K + K
Sbjct: 206 HHDITFTGKSQLNLRAVSHKAQDK 229