Pairwise Alignments

Query, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

Subject, 521 a.a., RNA polymerase sigma-54 factor 2 from Xanthobacter sp. DMC5

 Score =  521 bits (1342), Expect = e-152
 Identities = 286/521 (54%), Positives = 366/521 (70%), Gaps = 18/521 (3%)

Query: 1   MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGS 60
           MA+S  L  RQ+QSLVMTPQLMQ+I+LLQ+++ EL  ++  E+ERNPLLE        GS
Sbjct: 1   MAMSPKLEFRQSQSLVMTPQLMQAIKLLQLSNMELVAYVEAELERNPLLERITEGDTSGS 60

Query: 61  DTPVDV-DNFGDAEASDAAVRVTPDSDDWYG----ERAANLGEQLDTSFENVFPDD---- 111
           D   +V +  G+  A        P + DW G    +  A +  +LDT   NVFPDD    
Sbjct: 61  DPQPEVRETRGEEMARGGLDGEPPPASDWTGNDNEQSRAAMETRLDTDLGNVFPDDVPAD 120

Query: 112 ----GEPRKADAPELASQWKSMPGQESGESYDLDDFVAARQSLSDHLNQQLPLAISAAED 167
               G    A +P +  +W    G E GE Y+ + F+ A  +L+DHL  QL +A+S    
Sbjct: 121 RGVTGGGSTASSPSMG-EWSG--GGERGEDYNPEAFLTAETTLADHLEAQLSVAVSDPAR 177

Query: 168 RMIADALIGQLDETGYIAADAVDDVAERLGATPSAVEYVLKTLQGFDPPGIFSRSLSECL 227
           R+I   +IG +DETGY   D +D +A + G   + VE VLK +Q F+P G+ +R+L+ECL
Sbjct: 178 RLIGINVIGLIDETGYFTGD-LDLLAGQFGVPRAEVEAVLKLIQTFEPSGVGARNLAECL 236

Query: 228 ATQLAQKDRLDPAMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAG 287
           A QL ++DR DPAM+A V NLELLA+ D  +LK++CGVD EDL DM+ EIR L+P+PG  
Sbjct: 237 AIQLRERDRFDPAMQALVANLELLARHDRNALKRVCGVDNEDLADMIGEIRRLDPKPGLA 296

Query: 288 YDSMVSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFLS 347
           + S V   +VPD+ VRP + G WLVE+N +TLPRVL+NQSY A V KH A++ E++ FL+
Sbjct: 297 FGSGVVHPLVPDVYVRPGADGTWLVELNSETLPRVLVNQSYHATVVKH-AKSQEEKSFLA 355

Query: 348 ECMQTAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHEST 407
           +C+Q+A WLTRSLDQRARTI+KVASEIVRQQDAFL++GV  LRPLNL+TVADAI MHEST
Sbjct: 356 DCLQSASWLTRSLDQRARTILKVASEIVRQQDAFLLHGVRFLRPLNLRTVADAIGMHEST 415

Query: 408 VSRVTSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSD 467
           VSRVTS KY+ TPRG+ E+K+FFS +ISA  GG++HSAE+VRHRIK +I  EA + VLSD
Sbjct: 416 VSRVTSNKYISTPRGVVEMKFFFSSAISASGGGEAHSAESVRHRIKMLIEAEAPKDVLSD 475

Query: 468 DDIVDNLKKTGIDIARRTVAKYREAMNIPSSVQRRREKKAM 508
           D +V  LK  GIDIARRTVAKYRE MNIPSSVQRRREK AM
Sbjct: 476 DTLVQKLKDDGIDIARRTVAKYREGMNIPSSVQRRREKMAM 516