Pairwise Alignments

Query, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

Subject, 505 a.a., RNA polymerase sigma-54 factor RpoN from Sphingobium sp. HT1-2

 Score =  407 bits (1046), Expect = e-118
 Identities = 239/517 (46%), Positives = 323/517 (62%), Gaps = 21/517 (4%)

Query: 1   MALSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGS 60
           MAL   L +RQ+QSLVMTPQL Q+I+LL +++ E+  F+A E+E+NPLLE  A D     
Sbjct: 1   MALGPRLDIRQSQSLVMTPQLQQAIKLLALSNLEIEAFVAGELEKNPLLEQGAADDGGRE 60

Query: 61  DTPVDVDNFGDAEASDAAVRVTPDSDDWYGERAANLGEQLDTSF-ENVFPDDGEPRKADA 119
            + VD     + EA   A   T  SDD   +        LD       F DDG   +  A
Sbjct: 61  GSGVD----REVEAPTLAAE-TGASDDLIAQGLGGADSPLDVDHGAETFIDDGPADRMGA 115

Query: 120 PELASQWKSMPGQE-SGESYDLDDFVAARQSLSDHLNQQLPLAISAAEDRMIADALIGQL 178
              +     + G   SGE+ D D F  A  SL +HL  Q    +S   D +IA  LIGQ+
Sbjct: 116 GSGSGSLDMLGGGSGSGEAVDFDSFANAAPSLQEHLMDQARSTLSGM-DLLIATQLIGQI 174

Query: 179 DETGYIAADAVDDVAERLGATPSAVEYVLKTLQGFDPPGIFSRSLSECLATQLAQKDRLD 238
            E GY+ A+ +   A  LG     VE VL+ +  FDP G+ +RSL+ECLA Q  + +R D
Sbjct: 175 SEAGYLEANLLQ-TAHGLGVPLFTVEAVLEVIHSFDPTGVGARSLAECLALQAKEANRYD 233

Query: 239 PAMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYDSMVSETIVP 298
           P ++  + NL+LLAK     L+++CGVDEEDL DM+ E+R  +P+PG  + S  +  + P
Sbjct: 234 PCIQRLLANLDLLAKGALPQLRRICGVDEEDLADMIRELRGYDPKPGLRFASDSATPVTP 293

Query: 299 DIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQD-----FLSECMQTA 353
           D+ V  +  G W +E+N  TLPRVL+N++Y+ E+      AG  QD     +L++C+ +A
Sbjct: 294 DLFVSRTREG-WGIEVNSATLPRVLVNRTYYVEL------AGGPQDKASKAWLADCLASA 346

Query: 354 HWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHESTVSRVTS 413
           +WL ++LDQR +TI+KVASEIVRQQ+ F  NGV  L+PL L+ VADAI+MHESTVSRVTS
Sbjct: 347 NWLVKALDQRQKTIIKVASEIVRQQEDFFRNGVAYLKPLTLRAVADAIEMHESTVSRVTS 406

Query: 414 KKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDDDIVDN 473
            KY+  PRGL+ELKYFF+  ++A +G  + SAEAV+  IKA+I  E A A+LSDD +VD 
Sbjct: 407 NKYLSCPRGLYELKYFFTSGVAAADGDGAVSAEAVKSHIKALIGAEEAHAILSDDTLVDL 466

Query: 474 LKKTGIDIARRTVAKYREAMNIPSSVQRRREKKAMAK 510
           L+  G+DIARRTVAKYRE+M I SSVQRRR+K    K
Sbjct: 467 LRAKGMDIARRTVAKYRESMGIGSSVQRRRQKALKGK 503