Pairwise Alignments

Query, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

Subject, 497 a.a., RNA polymerase sigma-54 factor from Pseudomonas putida KT2440

 Score =  306 bits (783), Expect = 1e-87
 Identities = 192/515 (37%), Positives = 292/515 (56%), Gaps = 34/515 (6%)

Query: 3   LSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDT 62
           +  SL+L+  Q L MTPQL Q+I+LLQ++  +L Q I + +E NP+LE   +  D  +  
Sbjct: 1   MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGEDFDNSD 60

Query: 63  PV--DVDNFGDAEASDAAVRVTPDSDDWY--GERAANLGEQL--DTSFENVFPDDGEPRK 116
           P+  + +N   AE  D + + +  S D    GE +  +  +L  DT++E+++        
Sbjct: 61  PMADNAENKPAAEVQDNSFQESTVSADNLEDGEWSERIPNELPVDTAWEDIYQTSAS--- 117

Query: 117 ADAPELASQWKSMPGQESGESYDLDDFVAARQSLSDHLNQQLPLAISAAEDRMIADALIG 176
                      S+P  +  E +D     +A +SL  HL  QL LA  +  DR+IA  LI 
Sbjct: 118 -----------SLPSNDDDE-WDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLID 165

Query: 177 QLDETGYIAADAVDDVAE----RLGATPSAVEYVLKTLQGFDPPGIFSRSLSECLATQLA 232
            ++  GY+  D ++++       L      VE VL  +Q F+P G+ +R+L ECL  QL 
Sbjct: 166 SINGQGYLE-DTLEEICAGFDPELDIELDEVEAVLHRIQQFEPAGVGARNLGECLLLQLR 224

Query: 233 QKDRLDP----AMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGY 288
           Q     P    A R   D ++LL  RD++ L +   + E++L  ++  +++LNPRPG+  
Sbjct: 225 QLPATTPWMTEAKRLVTDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQI 284

Query: 289 DSMVSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFLSE 348
           +S   E +VPD+IVR  S   WLVE+N + +PR+ +N  Y   V   +A    D  F+  
Sbjct: 285 ESSEPEYVVPDVIVRKDSDR-WLVELNQEAIPRLRVNPQYAGFV--RRADTSADNTFMRN 341

Query: 349 CMQTAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHESTV 408
            +Q A W  +SL  R  T+MKVA++IV  Q  FL +G + ++PL L  +A+A+ MHEST+
Sbjct: 342 QLQEARWFIKSLQSRNETLMKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTI 401

Query: 409 SRVTSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDD 468
           SRVT++KYM TPRG++ELKYFFS  +S  EGG+  S+ A+R  IK ++A E  +  LSD 
Sbjct: 402 SRVTTQKYMHTPRGIYELKYFFSSHVSTSEGGEC-SSTAIRAIIKKLVAAENQKKPLSDS 460

Query: 469 DIVDNLKKTGIDIARRTVAKYREAMNIPSSVQRRR 503
            I   L+  GI +ARRTVAKYRE++ I  S +R+R
Sbjct: 461 KIAGLLEAQGIQVARRTVAKYRESLGIAPSSERKR 495