Pairwise Alignments

Query, 514 a.a., RNA polymerase sigma-54 factor from Agrobacterium fabrum C58

Subject, 477 a.a., RNA polymerase factor sigma-54 from Dickeya dianthicola ME23

 Score =  293 bits (749), Expect = 1e-83
 Identities = 197/514 (38%), Positives = 285/514 (55%), Gaps = 52/514 (10%)

Query: 3   LSASLLLRQNQSLVMTPQLMQSIQLLQMTHFELTQFIAQEVERNPLLEIAANDGDLGSDT 62
           +   L LR +Q L MTPQL Q+I+LLQ++  EL Q I Q +E NPLLE A    D+  + 
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQEIQQALESNPLLEQA----DIHDE- 55

Query: 63  PVDVDNFGDAEASDAAVRVTPDSDDWYGERAANLGEQLDTSFENVFPDDGEPRKADAPEL 122
            V+     D+E  D   R   +  D   E        LD +++ ++              
Sbjct: 56  -VETQESSDSETLD--TREALEQKDMPDEL------PLDAAWDEIY-------------- 92

Query: 123 ASQWKSMPGQESGESYDLDDFV------AARQSLSDHLNQQLPLAISAAEDRMIADALIG 176
                   G  SG S D  D           Q+L D+L  Q+ L   +  D  IA +++ 
Sbjct: 93  ------TAGTPSGTSTDYRDEELPVYQGETTQTLQDYLMWQVELTPFSDTDSAIATSIVD 146

Query: 177 QLDETGYIAADAVDDVAERLG---ATPSAVEYVLKTLQGFDPPGIFSRSLSECLATQLAQ 233
            +D TGY+   ++DD+ E +G    T   VE VLK +Q FDP G+ +R L ECL  QL+Q
Sbjct: 147 AVDNTGYLTV-SLDDIRESIGNDEVTLEEVEAVLKRVQRFDPVGVAARDLRECLLVQLSQ 205

Query: 234 KD----RLDPAMRAFVDNLELLAKRDFASLKKLCGVDEEDLLDMLAEIRTLNPRPGAGYD 289
            D    RL  A     + L LLA  DF +L +   + EE L + LA I++L+PRPG   +
Sbjct: 206 FDNSIPRLAEARLIVSEYLNLLANHDFRTLIRTSRLKEEVLKESLALIQSLDPRPGQSIN 265

Query: 290 SMVSETIVPDIIVRPSSTGGWLVEINPDTLPRVLINQSYFAEVSKHKARAGEDQDFLSEC 349
           +  SE ++PD++VR    G W VE+N D++PR+ INQ Y A  S   AR   D  F+   
Sbjct: 266 TGESEYVIPDVLVR-KIQGHWTVELNTDSVPRLQINQQYAALGS--SARNDSDGQFIRSH 322

Query: 350 MQTAHWLTRSLDQRARTIMKVASEIVRQQDAFLINGVDQLRPLNLKTVADAIKMHESTVS 409
           +Q A WL +SL+ R  T++KV   IV QQ AF  +G + ++P+ L  +A A+ MHEST+S
Sbjct: 323 LQEARWLIKSLESRNDTLLKVTRCIVEQQQAFFEHGEEFMKPMVLADIAQAVDMHESTIS 382

Query: 410 RVTSKKYMLTPRGLFELKYFFSVSISAVEGGDSHSAEAVRHRIKAMIAQEAAEAVLSDDD 469
           RVT++K++ +PRG+FELKYFFS  +S   GG++ S+ A+R  ++ +IA E     LSD  
Sbjct: 383 RVTTQKFLHSPRGIFELKYFFSSHVSTDNGGEA-SSTAIRALVRKLIAAENPAKPLSDSK 441

Query: 470 IVDNLKKTGIDIARRTVAKYREAMNIPSSVQRRR 503
           +   L + GI +ARRTVAKYRE+++IP S QR++
Sbjct: 442 LTSLLSEHGIIVARRTVAKYRESLSIPPSNQRKQ 475