Pairwise Alignments

Query, 298 a.a., formamidopyrimidine-DNA glycosylase from Agrobacterium fabrum C58

Subject, 269 a.a., bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase from Escherichia coli ECOR38

 Score =  178 bits (451), Expect = 1e-49
 Identities = 114/298 (38%), Positives = 162/298 (54%), Gaps = 29/298 (9%)

Query: 1   MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPADFAGLIEGKTIISLGRRAKYL 60
           MPELPEVET RRG+ P + GA +    +    LR+P   +   L + + ++S+ RRAKYL
Sbjct: 1   MPELPEVETSRRGIEPYLVGATILHAVVRNGRLRWPVSEEIYRLSD-QPVLSVQRRAKYL 59

Query: 61  LIELEDGLTIVSHLGMSGSFRIEAEKGEGGEAPGAFHYARSKDGKHDHVVFHLDKGEERV 120
           L+EL +G  I+ HLGMSGS RI  E     E P           KHDHV   +  G+   
Sbjct: 60  LLELPEGWIII-HLGMSGSLRILPE-----ELPPE---------KHDHVDLVMSNGK--- 101

Query: 121 CVIYNDPRRFGFMHLVERNKLDLYPAFAELGPEPTGNALSADYLASRFEGKSQPLKSTLL 180
            + Y DPRRFG    +   +L+ +   A LGPEP  +  + +YL  +   K   +K  L+
Sbjct: 102 VLRYTDPRRFGAW--LWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLM 159

Query: 181 DQKIIAGLGNIYVCEALWRAHLSPLRAAGTLVTTRGKPKAQLIDLTEKIRDVIADAIAAG 240
           D K++ G+GNIY  E+L+ A + P R A +L        A+   L   I+ V+  +I  G
Sbjct: 160 DNKLVVGVGNIYASESLFAAGIHPDRLASSL------SLAECELLARVIKAVLLRSIEQG 213

Query: 241 GSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCGGTVERVVQAGRSTFYCAACQK 298
           G++L+D +Q+DG  GYF     VY ++G+PCR   CG  +     A R+TFYC  CQK
Sbjct: 214 GTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRV--CGTPIVATKHAQRATFYCRQCQK 269