Pairwise Alignments

Query, 491 a.a., component of type IV pilus from Agrobacterium fabrum C58

Subject, 598 a.a., putative Type II secretion system protein from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 6e-14
 Identities = 93/361 (25%), Positives = 154/361 (42%), Gaps = 48/361 (13%)

Query: 39  DTLEPGQSPVTRQVTTGAPLSQKKRARTEDYYNTKSQVFSALIDTIDLSQLAKLDAESAR 98
           D  +P +      V  GAPL     A    +     + F A +D +D       DAE++ 
Sbjct: 138 DPFDPARLAWIDDVLQGAPLYLAHAADLATFLARHEESFHA-VDALDH------DAEASS 190

Query: 99  EEIRDIVNDIITIKNFAMSIAEQEELLEDICNDVLGYGPLEPLLARDDIADIMVNGSGQT 158
           E       D +   + A SI+E +  +  + N  L Y  L+  L   DI  + + G G T
Sbjct: 191 E------GDPLQRLSLA-SISEDQSRVVKLVNSTL-YDALK--LHASDI-HLGMTGQGLT 239

Query: 159 FIEVGGKTIESDIRFRDNAQLLSICQRIVSQVGRRVDESSPICDARLPDGSRVNVIAPPL 218
                   I+  +     A   +   +++S++  +V     I + R+P   R  V     
Sbjct: 240 I----KYRIDGVLNGAGKASGSAFADQVISRI--KVMAELDIGEKRVPQDGRFKVAVGDR 293

Query: 219 AID----------GPALTIRKFKR----DKLTLDQLVRFGAITPEGATLLKIIGRVRCNV 264
            ID          G    +R   +    D+++  QL   G        L ++       +
Sbjct: 294 QIDFRVSIMPSIFGEDAVLRVLDKQDLSDRVSGVQLQALGFADETLRALRRLAAEPYGMI 353

Query: 265 VISGGTGSGKTTLLNCLTSFIDKD-ERVITCEDTAELQLQQPHVVRLETRPPNIEGEGEI 323
           +++G TGSGKTT L  + S I+   +++IT ED  E QL  P V+++    P  E +G  
Sbjct: 354 LVTGPTGSGKTTTLYAMISEINHGVDKIITIEDPVEYQL--PGVLQI----PVNEKKGLT 407

Query: 324 TMRDLVKNCLRMRPERIVVGEVRGPEVFDL-LQAMNTGHDGSMGTLHANTPRECLSRIES 382
             R L ++ LR  P++I+VGE+R P+   + +Q+  TGH     T+HAN   + + R   
Sbjct: 408 FARGL-RSILRHDPDKILVGEIRDPDTAQIAVQSALTGH-LVFTTIHANNVFDVIGRFSQ 465

Query: 383 M 383
           M
Sbjct: 466 M 466