Pairwise Alignments

Query, 367 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 398 a.a., conserved inner membrane protein (NCBI) from Escherichia coli BW25113

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 93/342 (27%), Positives = 152/342 (44%), Gaps = 53/342 (15%)

Query: 18  FNGNAKEYFGIWIVNILLTIMTLGIYSAWAKVRRKRYFNGNTLLAGRAFGYHATGGQIFK 77
           F+G  + YF I +VN+LLTI+TLGIY  WA ++ KRY   N  + G+ F Y  TGG +F 
Sbjct: 17  FHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFV 76

Query: 78  GRLIAFAFIVFSQL--VGLIHPFLVFAPTILLLIFLPWVITRSIRFNARVTSYRNVRFDF 135
             L  F F  F+ L  V    P +    T+LLL+ L ++  + +R  A +TS   VRF F
Sbjct: 77  SCLF-FVFFYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRHQALMTSLNGVRFSF 135

Query: 136 ---------------------VGTAW-------------GAFVSILLGSFVALLSIGILA 161
                                +GT +                +S++L + V ++SIGI  
Sbjct: 136 NCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLPANSSSSVIISMVLMAIVGIVSIGIFN 195

Query: 162 PLASRWANRYIVSNLHYGDRRFSTDPKIGALY-RAWIIPALLVVVGGVLAVFLLIFLAMV 220
                    ++ SN  +G  RF    K+   Y   + I A L ++  +     +IF  ++
Sbjct: 196 GTLYSLVMSFLWSNTSFGIHRFKV--KLDTTYCIKYAILAFLALLPFLAVAGYIIFDQIL 253

Query: 221 LVQAAGIGSRELATAPENYEIVTLFGLGQILINLLVAMLIYGF---ASTVY-KAGVRNVV 276
               + + +        N +I  L    ++   +++A LIY F    ST Y    +RN  
Sbjct: 254 NAYDSSVYA--------NDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHF 305

Query: 277 VSS-TLLDGKHELHSDLHRGRYLWIVFSNLIVTIFTFGLMRP 317
           +S+ +L DG+      L     L+ + + ++++  T GL  P
Sbjct: 306 MSNLSLNDGRIRFRLTLTYHGMLYRMCALVVISGITGGLAYP 347



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 14/115 (12%)

Query: 133 FDFVGTAWGAFVSILLGSFVALLSIGILAPLASRWANRYIVSNLHYGDRRFSTDPKIGAL 192
           F F GT    F+  ++   + ++++GI  P A     RY+ +N+    +RFS     G +
Sbjct: 15  FVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNV 74

Query: 193 YRAWI------------IPALLVVVGGVLAVFLLIFLAMVLVQAAGIGSRELATA 235
           + + +            + A + +VG VL + LL+ L  + + A G+  + L T+
Sbjct: 75  FVSCLFFVFFYFAILMTVSADMPLVGCVLTLLLLVLL--IFMAAKGLRHQALMTS 127



 Score = 32.0 bits (71), Expect = 3e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 289 HSDLHRG---RYLWIVFSNLIVTIFTFGLMRPWAAVREAQYAVERMGIS 334
           HS +  G   RY  I   N+++TI T G+  PWA ++  +Y    M ++
Sbjct: 13  HSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVN 61



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 17/87 (19%)

Query: 65  AFGYHATGGQIFKGRLIAFAFIVFSQLVGLIHPFLVFAPTILLLIFLPWVITRSIRFNAR 124
           +F +H TG + F                 LI    V    I L I+LPW + +  R+   
Sbjct: 14  SFVFHGTGERYF-----------------LICVVNVLLTIITLGIYLPWALMKCKRYLYA 56

Query: 125 VTSYRNVRFDFVGTAWGAFVSILLGSF 151
                  RF +  T    FVS L   F
Sbjct: 57  NMEVNGQRFSYGITGGNVFVSCLFFVF 83