Pairwise Alignments

Query, 348 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 367 a.a., Ammonia monooxygenase from Variovorax sp. SCN45

 Score =  101 bits (252), Expect = 3e-26
 Identities = 86/346 (24%), Positives = 158/346 (45%), Gaps = 40/346 (11%)

Query: 13  TALVGSMGALLASLLHIPAPFLSGPALAVTITGLAGVKLGIPAFIRNACFVVVGISMGTS 72
           T L+    A    +LH P P++ GP +AV++  +AG+       +RNA    +G+++G  
Sbjct: 26  TLLLALAAAGACLVLHTPLPWMIGPLIAVSLASIAGLPTASHTPLRNAGQWTIGMALGLY 85

Query: 73  VTPSVIDAAKTWPLSFIVVLVAVVIMLYVAYWILHYGFGYDR------------------ 114
            TP V+          +V  V   I L +  W L  G+G+ R                  
Sbjct: 86  FTPHVVS---------LVASVWWAIALAIG-WALLLGWGFGRWLHGVHSARMPHVPEKSM 135

Query: 115 --TTAMLGASPGHLSY-IISLGAETKSDLATVSIVQSVRVLALTLSVPLIVEYFDLVSTE 171
             TT   GA  G     +++  A  ++DL  V+   S+R++ +T+++P  +++  L   E
Sbjct: 136 RATTYFSGAIGGASEMTLMAESAGARTDL--VAAAHSLRLVVVTVTIPFAMQWSGLHGLE 193

Query: 172 PLITNPP----MGFFTLALTIAASLLTGWLFLRWKFPAALLLGGVAISIGTHITGLTEGG 227
               NPP    +    LAL  AA+ L G      K      +G + +++G  + G +   
Sbjct: 194 ---INPPGVREVNPGGLALLAAATGLGGLAMRALKRTNPWFIGPLLVAMGFTMAGQSLSA 250

Query: 228 VPSWLSLPVYVLIGCLIGTRFSNVSLMEVRKGFLAGFVVTIAVMVIAGTIAWLISRVTGV 287
           VP+W+S    ++I   +G RFS   L    +   +  + T  ++ + G +AWL++  TG+
Sbjct: 251 VPTWMSNTAQLVIAVSLGVRFSREFLHTAPRWLGSVVLGTFGMLALCGGVAWLLAAATGL 310

Query: 288 PLNAVMIAYAPGGLETMAAMAVMMHADTAYVGSHHVIRLLFLSVLM 333
               +++  +PGG+  M+  A ++      V +  V RL+ + +L+
Sbjct: 311 HPATMILGTSPGGIAEMSITAKVLQLGVPVVTAFQVCRLVAVLLLV 356



 Score = 50.8 bits (120), Expect = 5e-11
 Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 11  ALTALVGSMGALLASLLHIPAPFLSGPALAVTITGLAGVKLG-IPAFIRNACFVVVGISM 69
           AL A    +G L    L    P+  GP L      +AG  L  +P ++ N   +V+ +S+
Sbjct: 208 ALLAAATGLGGLAMRALKRTNPWFIGPLLVAMGFTMAGQSLSAVPTWMSNTAQLVIAVSL 267

Query: 70  GTSVTPSVIDAAKTWPLSFIVVLVAVVIMLYVAYWILHYGFGYDRTTAMLGASPGHLSYI 129
           G   +   +  A  W  S ++    ++ +     W+L    G    T +LG SPG ++ +
Sbjct: 268 GVRFSREFLHTAPRWLGSVVLGTFGMLALCGGVAWLLAAATGLHPATMILGTSPGGIAEM 327

Query: 130 ISLGAETKSDLATVSIVQSVRVLALTLSV 158
                  +  +  V+  Q  R++A+ L V
Sbjct: 328 SITAKVLQLGVPVVTAFQVCRLVAVLLLV 356



 Score = 27.7 bits (60), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 297 APGGLETMAAMAVMMHADTAYVGSHHVIRLLFLSVLMPLVM 337
           A GG   M  MA    A T  V + H +RL+ ++V +P  M
Sbjct: 144 AIGGASEMTLMAESAGARTDLVAAAHSLRLVVVTVTIPFAM 184