Pairwise Alignments

Query, 303 a.a., ABC transporter, substrate binding protein (proline/glycine/betaine) from Agrobacterium fabrum C58

Subject, 313 a.a., putative Glycine betaine/carnitine/choline ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  124 bits (312), Expect = 2e-33
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 12/301 (3%)

Query: 3   RLMTLTGAGLALAFSVSIAQAQVV-VSSKIDTEGGVLGNIILAVLNQNKIETTDRIQLGA 61
           R+  L GA L  A     A+  ++ + +++ TE  VL  I    L  N  +      LG+
Sbjct: 14  RIALLLGAALLFAGFAQAAEKPLIRIGARVFTEQTVLAEITAQYLRANGFDVRVIGGLGS 73

Query: 62  TPVVRKAITAGEIDIYPEYTGNAAFFFSKADDPLWKDAAKGYEEAKTLDYDANKIVWLAP 121
           + + R+A   G++D+  EYTG +   ++  D+ +   A   Y + K LD   + ++WL P
Sbjct: 74  S-LARQAQETGQLDLMWEYTGVSLVSYNHIDERM-PSAEATYAKVKELDAKKD-LIWLTP 130

Query: 122 SPANNTWAIALRKDVADKN-NLKTLSDFGKYVAGGG--TVVLAASSEFVNSAAALPAFQT 178
           S  +NT+A+ L K VA+    + ++SD  + +        ++A  +EF N    L   + 
Sbjct: 131 SKFSNTYALGLPKQVAEAYPQINSISDLNQVLRDERKRNHLVALDTEFANRPDGLVGLKE 190

Query: 179 TYGFTMKPDQLITLSGGDTAATIAAAANQTNNANAAMVYGTDGGIAPSGLVVLEDDKHVQ 238
            Y   +    +  +  G     +   A   N   A +VY TDG ++   L +LEDDKH  
Sbjct: 191 MYDLQVGRANIRQMDAG-----LVYTAMHNNQVFAGLVYTTDGRLSAFNLKLLEDDKHYF 245

Query: 239 PVYQPAPIIREEVLKKHPNIEELLKPVFEKLDLATLQDLNARVQVGGEQAKTVAMDFLTK 298
           P Y  AP++R+ VL  +P +  LLKP+ E+LD  T++ LNA+V V  +    VA  FL +
Sbjct: 246 PDYTAAPVVRKAVLDANPQLVALLKPLAEQLDDETMRQLNAKVDVDHQNPTAVAAAFLRE 305

Query: 299 N 299
           +
Sbjct: 306 H 306