Pairwise Alignments

Query, 546 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

Subject, 623 a.a., Dipeptide transport ATP-binding protein DppD in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  473 bits (1218), Expect = e-138
 Identities = 271/562 (48%), Positives = 362/562 (64%), Gaps = 33/562 (5%)

Query: 3   ETNTQPLLSVRDLSVAFHQGGATSVAVDHVSFDLMPGEVVALVGESGSGKSVTANSILKL 62
           E +++ +LSV  L++AFH  G    AV +VS  L  GE +A+VGESGSGKSVTA ++++L
Sbjct: 6   ELDSRDVLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRL 65

Query: 63  LPYPAASHPSGKILFD--GKDMLTLPERA---LRAVRGNDITMIFQEPMTSLNPLHTIER 117
           +    A+   G++L     + ++ L E++   +R VRG DI MIFQEPMTSLNP+ T+  
Sbjct: 66  IEQSGANVRCGEMLLRRRNRQVIELSEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGE 125

Query: 118 QIGEILELHQAITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALAN 177
           QI E + LHQ  +  EA      +L QV I E +  L  YPH+LSGG RQRVMIAMAL+ 
Sbjct: 126 QIAESIRLHQGASHEEALAEAKRMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSC 185

Query: 178 RPKLLIADEPTTALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKG 237
           RP +LIADEPTTALDVT+QAQIL+L+  L+ +  M ++FITHD+G+V   ADRV VM +G
Sbjct: 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQQEMSMGVIFITHDMGVVADIADRVLVMYQG 245

Query: 238 KIVETGTVEQVFTDPQHAYTRHLLAAEPK------------------GEPP--HSDASKP 277
           + VETG+VEQ+F  P H YT+ LLAA P+                   EP    S   + 
Sbjct: 246 EAVETGSVEQIFHAPTHPYTQTLLAAVPQLGAMRGHSLPRRFPLISADEPALYESQIEQD 305

Query: 278 VVMQGDDI------KVWFPIKAGLMRRVIDHVKAVDGIDITLRAGQTVGVVGESGSGKTT 331
            V++G+ I         FP+++GL  RV   V AV+ I   L  G+T+ +VGESGSGK+T
Sbjct: 306 TVVEGEPILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKST 365

Query: 332 LGLALSRLIASK-GRISFIGQSIDSYSYEMMKPLRNRLQVVFQDPYGSLSPRMSVGEIIA 390
            G AL RL+ S+ G I F GQ ID+ S   ++PLR  +Q +FQDPY SL PR +VG  I 
Sbjct: 366 TGRALLRLVESRQGEIIFNGQRIDTLSAGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIM 425

Query: 391 EGLKVHERSLSADERDTRVATALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPRF 450
           E L++H      D    RVA  LE VGL P   WRYPHEFSGGQRQRI IARA+ L P+ 
Sbjct: 426 EPLRIHGLG-QGDAAAKRVAWLLERVGLRPEHAWRYPHEFSGGQRQRICIARALALNPKV 484

Query: 451 VMLDEPTSALDMSVQAQVVDLLRDLQAKHELAYLFISHDLRVVKALANDLIVMRHGKVVE 510
           ++ DE  SALD+SV+ Q+++LL DLQ +  +AYLFISHD+ VV+ +++ + VM  G++VE
Sbjct: 485 IIADEAVSALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544

Query: 511 SGPAAEIFANPQQDYTKALLAA 532
            GP   +F NPQ  YT+ L+AA
Sbjct: 545 MGPRRAVFENPQHPYTRKLMAA 566



 Score =  206 bits (524), Expect = 2e-57
 Identities = 127/286 (44%), Positives = 177/286 (61%), Gaps = 17/286 (5%)

Query: 7   QPLLSVRDL-------SVAFHQGGATSVAVDHVSFDLMPGEVVALVGESGSGKSVTANSI 59
           +P+L VR L       S  F++      AV+++SFDL PGE ++LVGESGSGKS T  ++
Sbjct: 311 EPILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKSTTGRAL 370

Query: 60  LKLLPYPAASHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTIERQI 119
           L+L+         G+I+F+G+ + TL    L+ +R  DI  IFQ+P  SL+P  T+   I
Sbjct: 371 LRLV-----ESRQGEIIFNGQRIDTLSAGKLQPLR-RDIQCIFQDPYASLDPRQTVGYSI 424

Query: 120 GEILELHQAITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALANRP 179
            E L +H    G  A +R   LL +VG+R PE   + YPHE SGGQRQR+ IA ALA  P
Sbjct: 425 MEPLRIHGLGQGDAAAKRVAWLLERVGLR-PEHAWR-YPHEFSGGQRQRICIARALALNP 482

Query: 180 KLLIADEPTTALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKGKI 239
           K++IADE  +ALDV+V+ QI+ LL DL+ + G++ LFI+HD+ +V + + RV VM  G+I
Sbjct: 483 KVIIADEAVSALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRVAVMYLGQI 542

Query: 240 VETGTVEQVFTDPQHAYTRHLLAAEPKGEPPHSDASKPVVMQGDDI 285
           VE G    VF +PQH YTR L+AA P  +P      +  V+  DDI
Sbjct: 543 VEMGPRRAVFENPQHPYTRKLMAAVPVADPSRHRPRR--VLLSDDI 586



 Score =  160 bits (404), Expect = 2e-43
 Identities = 93/251 (37%), Positives = 148/251 (58%), Gaps = 15/251 (5%)

Query: 303 VKAVDGIDITLRAGQTVGVVGESGSGKTTLGLALSRLIASKGRISFIGQ----------- 351
           V AV  + + L+ G+T+ +VGESGSGK+   LAL RLI   G     G+           
Sbjct: 29  VDAVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLIEQSGANVRCGEMLLRRRNRQVI 88

Query: 352 SIDSYSYEMMKPLRNR-LQVVFQDPYGSLSPRMSVGEIIAEGLKVHERSLSADERDTRVA 410
            +   S   M+ +R   + ++FQ+P  SL+P  +VGE IAE +++H+ + S +E      
Sbjct: 89  ELSEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA-SHEEALAEAK 147

Query: 411 TALEEVGL--DPATRWRYPHEFSGGQRQRIAIARAMVLKPRFVMLDEPTSALDMSVQAQV 468
             L++V +    A   RYPH+ SGG RQR+ IA A+  +P  ++ DEPT+ALD+++QAQ+
Sbjct: 148 RMLDQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207

Query: 469 VDLLRDLQAKHELAYLFISHDLRVVKALANDLIVMRHGKVVESGPAAEIFANPQQDYTKA 528
           + L++ LQ +  +  +FI+HD+ VV  +A+ ++VM  G+ VE+G   +IF  P   YT+ 
Sbjct: 208 LQLIKVLQQEMSMGVIFITHDMGVVADIADRVLVMYQGEAVETGSVEQIFHAPTHPYTQT 267

Query: 529 LLAAAFNIEAV 539
           LLAA   + A+
Sbjct: 268 LLAAVPQLGAM 278