Pairwise Alignments

Query, 546 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  473 bits (1218), Expect = e-138
 Identities = 263/556 (47%), Positives = 356/556 (64%), Gaps = 30/556 (5%)

Query: 5   NTQPLLSVRDLSVAFHQGGATSVAVDHVSFDLMPGEVVALVGESGSGKSVTANSILKLLP 64
           +  P+LSV++L+ +F   G     V ++SFD+ P E VA+VGESGSGKSVT+ SI++LL 
Sbjct: 14  SVSPVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLD 73

Query: 65  YPAASHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTIERQIGEILE 124
               S   GK++  G+D+L LPE  +R VRG DI+MIFQEPMTSLNP+  I +QI E L 
Sbjct: 74  RKT-SRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALT 132

Query: 125 LHQAITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALANRPKLLIA 184
           +HQ I+ + A+   + LL +V I     R   YPH+ SGG RQRVMIAMALA++PKLLIA
Sbjct: 133 VHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIA 192

Query: 185 DEPTTALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKGKIVETGT 244
           DEPTTALDVT+Q QIL+L+  L+ + GMS+LFITHD+G+V + ADR  VM +G +VETGT
Sbjct: 193 DEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGT 252

Query: 245 VEQVFTDPQHAYTRHLLAAEPK--------------------GEPPHSDASKPVVMQG-- 282
            + +F   QH YTR LL+A PK                    GE P    +K  V  G  
Sbjct: 253 TDDIFHRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKT 312

Query: 283 -----DDIKVWFPIKAGLMRRVIDHVKAVDGIDITLRAGQTVGVVGESGSGKTTLGLALS 337
                 D+   F I++GL  R    V AV+ +   L  G+T+ +VGESG GK+T G +++
Sbjct: 313 PILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSIT 372

Query: 338 RLI-ASKGRISFIGQSIDSYSYEMMKPLRNRLQVVFQDPYGSLSPRMSVGEIIAEGLKVH 396
           RLI  + G ++  G  +       ++ +R  +Q+VFQDP+ SL PRMSVG  I E    H
Sbjct: 373 RLIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEH 432

Query: 397 ERSLSADERDTRVATALEEVGLDPATRWRYPHEFSGGQRQRIAIARAMVLKPRFVMLDEP 456
                A  R+ + A  LE+VGL P    R+PHEFSGGQRQRIAIAR+++L P+ ++ DE 
Sbjct: 433 RLGQKAQARE-KAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEA 491

Query: 457 TSALDMSVQAQVVDLLRDLQAKHELAYLFISHDLRVVKALANDLIVMRHGKVVESGPAAE 516
            SALD+S++AQV +LL DLQ    LA+LFISHD+ VV+ +++ + VM  G++VE GP A 
Sbjct: 492 VSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAA 551

Query: 517 IFANPQQDYTKALLAA 532
           +F NPQ  YTK L++A
Sbjct: 552 VFDNPQHPYTKKLMSA 567



 Score =  194 bits (493), Expect = 8e-54
 Identities = 117/287 (40%), Positives = 172/287 (59%), Gaps = 19/287 (6%)

Query: 8   PLLSVRDLSVAF--------HQGGATSVAVDHVSFDLMPGEVVALVGESGSGKSVTANSI 59
           P+LSV+DL+  F         + GA   AV+ VSFDL  GE ++LVGESG GKS T  SI
Sbjct: 313 PILSVKDLTTRFDIRSGLFGRKSGAVH-AVEKVSFDLAEGETLSLVGESGCGKSTTGRSI 371

Query: 60  LKLLPYPAASHPSGKILFDGKDMLTLPERALRAVRGNDITMIFQEPMTSLNPLHTIERQI 119
            +L+        SG +  DG ++L L    LR +R   + M+FQ+P  SL+P  ++   I
Sbjct: 372 TRLI-----EPTSGNVTLDGYEVLKLDRTTLRTMR-RSVQMVFQDPFASLDPRMSVGTAI 425

Query: 120 GEILELHQAITGAEARQRTLELLLQVGIREPEKRLKAYPHELSGGQRQRVMIAMALANRP 179
            E    H+    A+AR++  +LL +VG+  P+  +K +PHE SGGQRQR+ IA +L   P
Sbjct: 426 MEPFMEHRLGQKAQAREKAADLLEKVGL-SPDM-MKRFPHEFSGGQRQRIAIARSLMLDP 483

Query: 180 KLLIADEPTTALDVTVQAQILELLGDLKTQHGMSMLFITHDLGIVRKFADRVCVMTKGKI 239
           K+++ADE  +ALDV+++AQ+  LL DL+    ++ LFI+HD+ +V + + RV VM  G+I
Sbjct: 484 KVIVADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEI 543

Query: 240 VETGTVEQVFTDPQHAYTRHLLAAEPKGEPPHSDASKPVVMQGDDIK 286
           VE G    VF +PQH YT+ L++A P  +P      +   M  D+IK
Sbjct: 544 VEIGPRAAVFDNPQHPYTKKLMSAVPVPDPARRQIRRN--MATDEIK 588



 Score =  165 bits (417), Expect = 5e-45
 Identities = 92/234 (39%), Positives = 151/234 (64%), Gaps = 9/234 (3%)

Query: 317 QTVGVVGESGSGKTTLGLALSRLIASK-----GRISFIGQSIDSYSYEMMKPLRNR-LQV 370
           +TV +VGESGSGK+   L++ RL+  K     G++   G+ + +   E M+ +R + + +
Sbjct: 49  ETVAIVGESGSGKSVTSLSIMRLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISM 108

Query: 371 VFQDPYGSLSPRMSVGEIIAEGLKVHERSLSADERDTRVATALEEVGL-DPATRWR-YPH 428
           +FQ+P  SL+P   +G+ IAE L VH+  +S+      V   LE+V + + A+R+  YPH
Sbjct: 109 IFQEPMTSLNPIFPIGKQIAEALTVHQ-DISSSAAKAEVIRLLEKVRIPNAASRFGDYPH 167

Query: 429 EFSGGQRQRIAIARAMVLKPRFVMLDEPTSALDMSVQAQVVDLLRDLQAKHELAYLFISH 488
           +FSGG RQR+ IA A+  KP+ ++ DEPT+ALD+++Q Q++DL++ LQ +  ++ LFI+H
Sbjct: 168 QFSGGMRQRVMIAMALASKPKLLIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITH 227

Query: 489 DLRVVKALANDLIVMRHGKVVESGPAAEIFANPQQDYTKALLAAAFNIEAVETK 542
           D+ VV  +A+  IVM  G VVE+G   +IF   Q  YT+ALL+A   + ++ ++
Sbjct: 228 DMGVVAEVADRTIVMFRGDVVETGTTDDIFHRGQHPYTRALLSAVPKLGSMRSR 281