Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 622 a.a., ABC transporter, periplasmic substrate-binding protein from Pseudomonas fluorescens GW456-L13

 Score =  363 bits (933), Expect = e-105
 Identities = 220/605 (36%), Positives = 331/605 (54%), Gaps = 21/605 (3%)

Query: 14  LAASALLIPAVA----SAQSTDVWRKGISTVGE-LKHPDGFDHFDYVNTKAPKGGTLRLS 68
           LA   LL  AVA    +A      +  ++  GE  K+P GF HF Y N +APKGGT+R S
Sbjct: 3   LAFPTLLFTAVALLMGAAGVHAAPQPAMTVYGEPAKYPPGFSHFAYTNPQAPKGGTMRRS 62

Query: 69  TS--GTFDTLNPLLAKGERATGLS-LVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKAT 125
               G FD + P + KG   T +  L+Y  L + + +E    YGL+AE +   +D     
Sbjct: 63  AIEIGQFDHVLPYIDKGIGVTQIDGLIYSPLAQRSLDEPYTVYGLVAEKMERSEDGLSLR 122

Query: 126 FRLRQDAKWADGKPVTPEDVVFSFEKAKDL-SPQLATYYTHVTKAEVSGERDITFTFDEK 184
           F L   A++ADGKP+T +DV ++F+      S +  T +  V   EV     I F F   
Sbjct: 123 FYLNPKARFADGKPITAQDVRYTFDLLMTQGSLRYRTQFADVKSVEVESPLTIRFDFKNN 182

Query: 185 NNRELPQIVGQLLIVPKHWWEGTGPDGKPRDISRGT-LEPVMGSGPYKIAAVSPGSSVTY 243
            NR LP  +  L + P+HWW       K RD + G   E  +GSGPYK+  +  G S+T+
Sbjct: 183 ENRTLPLDIATLPVFPEHWW-------KSRDFAGGGGYEAPLGSGPYKVGKIDSGRSITF 235

Query: 244 ERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVTGYDF 303
           ER  D+WGKD+ V+ G+ NF   +  +F D DV  Q  + G  D+ +E S++ +  GY+ 
Sbjct: 236 ERNPDWWGKDLPVSRGLYNFDHFSIEYFGDTDVARQVLRGGAYDYNREFSATAYSIGYES 295

Query: 304 PAVKEGRVKKEELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAFDFEELNRTLAYG 363
           PA+ +GR++K  L     +    Q FV N+++  FQ+ ++R+AL   +DFE  NR +   
Sbjct: 296 PALSDGRLQKAHLAT--EAPQPAQGFVFNLQKPIFQDRRVRQALVMLWDFEWSNRQMMRD 353

Query: 364 QFQRITSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQRDNLR 423
            + R  SFF  ++LA+  LP   E  IL+ L+ Q+P EVFT  +  P        RD   
Sbjct: 354 MYIRQQSFFSNTDLAARQLPDAGERAILEPLRGQIPDEVFTQVFEAPKTDGSGVIRDKQL 413

Query: 424 EAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSGMERTILPYVQNLKKIGINATIRT 483
           +A+ L+++AG++  G+++VNA  G+ L   FL+  +GM+R +LPY + LK+IGI+  IR 
Sbjct: 414 QALDLLEQAGWKPDGDQLVNAH-GEPLSFTFLVSQNGMDRLLLPYKRTLKQIGIDLNIRR 472

Query: 484 VDASQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLAGIKNPAVDAL 543
           +D+SQY NR  S D+D+ +  +  + +PG E  +++GS AA   GSNN   ++NPAVD L
Sbjct: 473 IDSSQYVNRLMSRDYDMIVTGYPVTTSPGGELVNYFGSEAATDPGSNNYMVLQNPAVDTL 532

Query: 544 VRKVIFAPNRDEQVAAARALDRVLLANSYVIPQFYRGEMFIAYWNTLIRPENLPEYGVGF 603
           +  +I A  + + +  A ALDRVL  N Y IP +Y       +WN    P N+       
Sbjct: 533 ITGLIRANTQADMLHYAHALDRVLQWNYYWIPNYYPPGTSTVWWNRFGIP-NVQASNDEA 591

Query: 604 PDAWW 608
            ++WW
Sbjct: 592 IESWW 596