Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 137/560 (24%), Positives = 222/560 (39%), Gaps = 124/560 (22%)

Query: 5   PLKSRILIALAASALLIPAVASAQSTDVWRKGISTVGELKHPDGFDHFDYVNTKAPKGGT 64
           P++S +L AL A+ L   A   + S      G  T+     P                  
Sbjct: 9   PIRSALLAALLAAGLAAHAAPPSHS------GTLTLLSTSEPTA---------------- 46

Query: 65  LRLSTSGTFDTLNPLLAKGERATGLSLVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKA 124
             L T G   T  P+L+   + T   L YD  + + + +L+  + +  +G++Y       
Sbjct: 47  --LVTIGNVAT--PILSVSAKVTEGLLKYDYDV-NPQPQLATKWVISPDGLTY------- 94

Query: 125 TFRLRQDAKWADGKPVTPEDVVFSFEKAKDLSPQLATYYTHVTKAEVSGERDITFTFDEK 184
           TF LRQ  KW DGK  T  DV +S E  K + P+    + ++T  +   +    +T   +
Sbjct: 95  TFTLRQGVKWHDGKDFTSADVAYSIELLKKIHPRGRNTFANLTAIDTPDK----YTAILR 150

Query: 185 NNRELPQIVGQLL-----IVPKHWWEGTGPDGKPRDISRGTLEPVMGSGPYKIAAVSPGS 239
            ++  P ++  L+     IVPKH +EGT P   P +         +G+GP+K      GS
Sbjct: 151 LSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNN------NAPIGTGPFKFKEWVRGS 204

Query: 240 SVTYERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVT 299
            + YER +DYW K             +   F  D      AF++GTVD            
Sbjct: 205 HIVYERNNDYWDKPKPF------VDQLIVRFVTDPAAAAVAFETGTVDL----------- 247

Query: 300 GY--DFPAVKEGRVKK------EELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAF 351
           GY    P     R+KK      E   N Y S      F  N+  E F+N K+R+A+ +A 
Sbjct: 248 GYRTPVPLADLERLKKVPALRFETKGNSYSSNVTRLEF--NLDNEYFKNEKVRQAVAHAI 305

Query: 352 DFEELNRTLAYGQFQRITSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPV 411
           D   + + + YG            +++ S +  G     L+   D  P         +P 
Sbjct: 306 DRNVIVKVVNYGY----------GQVSYSPIAPG-----LKAFHDPAP---------SPY 341

Query: 412 AGDPAKQRDNLREAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSGME-RTILPYVQ 470
           A D       +++A  L+ EAG+  +       A G +  +    +  G +   +  Y++
Sbjct: 342 AFD-------VKKANALLDEAGFPKK-------AGGVRFSVPLDFNPIGADGPRLADYLR 387

Query: 471 N-LKKIGINATIRTVDASQ-----YTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAA 524
           + L +IGI  T+R  D S      YT+R  +F  +    L+  +      Q  +W     
Sbjct: 388 SALARIGIAVTVRAQDPSAFIKRIYTDRDFAFTHNGASNLFDPTV---GVQRLYWSKNFI 444

Query: 525 DRQGSNNLAGIKNPAVDALV 544
                +N    +NP VD L+
Sbjct: 445 KGVPFSNGTHYQNPVVDKLL 464