Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 609 a.a., extracellular solute-binding protein, family 5 from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  421 bits (1081), Expect = e-122
 Identities = 247/610 (40%), Positives = 341/610 (55%), Gaps = 29/610 (4%)

Query: 14  LAASALLIPAVASAQSTDVWRKGISTVGELKHPDGFDHFDYVNTKAPKGGTLRLSTSGTF 73
           L   +L +   A+A  T+    G +  G LK+P  F HFD+VN +APKGGTLR+   GTF
Sbjct: 6   LLTLSLALSFCANAAITE--SHGYAQFGVLKYPASFTHFDWVNPEAPKGGTLRMMAFGTF 63

Query: 74  DTLNPLLAKGER--ATGLSLVY------DTLMKSTEE------ELSASYGLLAEGVSYPD 119
           DTLNP   KG    +TG  L Y      + LM  T +      E ++SYGL+A+ V Y +
Sbjct: 64  DTLNPYTFKGSSPVSTGNFLQYGVNELNEPLMVGTGQYDPSGDEPTSSYGLIAQSVEYSE 123

Query: 120 DIEKATFRLRQDAKWADGKPVTPEDVVFSFEKA-KDLSPQLATYYTHVTKAEVSGERDIT 178
           D     F LR  A++ DGKP+T  DV FS+    KD  PQ  T    V + ++     I 
Sbjct: 124 DRSWVVFNLRPQARFHDGKPITAYDVAFSYRTLLKDGHPQYRTALQEVQRVDILNRHRIR 183

Query: 179 FTFDEKNNRELPQIVGQLLIVPKHWWEGTGPDGKPRDISRGTLEPVMGSGPYKIAAVSPG 238
           F F    N  L   +G+L ++P+H+W       K RD    T EP +GSGPY+I  V PG
Sbjct: 184 FVFKRSGNPLLILRLGELPVLPQHYW-------KDRDFKATTFEPPLGSGPYRITRVQPG 236

Query: 239 SSVTYERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWV 298
             + +ER  DYWGKD+ VN G  NF  +   F+ D DV F+AFK+G  D   E  +  W 
Sbjct: 237 RQLVFERVKDYWGKDLPVNRGKYNFDRVEVEFYRDSDVAFEAFKAGEFDIYIEHQAKNWA 296

Query: 299 TGYDFPAVKEGRVKKEELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAFDFEELNR 358
            GYDFPAV  G+V K ++P  +R     Q    N RR  F + ++R+AL   F+FE  NR
Sbjct: 297 NGYDFPAVANGQVIKAQIP--HRIPTQTQGLFMNTRRAAFADIRVREALGLLFNFEWTNR 354

Query: 359 TLAYGQFQRITSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQ 418
           TL    + R TS++  SE +++GLPTG E  +L   +DQ+P  +FT  +           
Sbjct: 355 TLFSDAYDRSTSYYPNSEFSATGLPTGAEWLLLAPYRDQLPASLFTQPFAPSKTDGGGIP 414

Query: 419 RDNLREAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSGMERTILPYVQNLKKIGIN 478
           R+ LR+A+KL+ EAG+ L    ++NA   Q L  E L+ +  +ER + PY+++L+++GIN
Sbjct: 415 RETLRKALKLLAEAGWTLSDKGLLNADK-QPLRFEILLVNPNLERILQPYIEDLRRLGIN 473

Query: 479 ATIRTVDASQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLAGIKNP 538
           A +RTVD +QY  R   FDFD+ +     + +PG EQ  ++ S+ A   GS N AGI NP
Sbjct: 474 AGLRTVDRAQYKQRLDRFDFDMILMTLQQTLSPGLEQWQYFHSSQAAINGSKNYAGIANP 533

Query: 539 AVDALVRKVIFAPNRDEQVAAARALDRVLLANSYVIPQFYRGEMFIAYWNTLIRPENLPE 598
            VDAL+ K++ A  RD+QVAAARALDRVLL+  Y IP +Y     +AY N        P 
Sbjct: 534 VVDALLNKLLAAQTRDDQVAAARALDRVLLSQHYSIPNWYLNNHRLAYRNRFAM-VTTPP 592

Query: 599 YGVGFPDAWW 608
           Y +G   AWW
Sbjct: 593 YTLGL-RAWW 601