Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 609 a.a., Peptide ABC transporter, periplamic peptide-binding protein from Pseudomonas putida KT2440

 Score =  424 bits (1091), Expect = e-123
 Identities = 245/615 (39%), Positives = 347/615 (56%), Gaps = 31/615 (5%)

Query: 9   RILIALAASALLIPAVASAQSTDVWRKGISTVGELKHPDGFDHFDYVNTKAPKGGTLRLS 68
           R L+   + AL  PA A    +     G +  G LK+P  F HFD+VN +APKGGTLR  
Sbjct: 3   RPLLLSLSLALSFPAAAIVSESH----GYAQFGTLKYPATFTHFDWVNPQAPKGGTLRAM 58

Query: 69  TSGTFDTLNPLLAKGE--------RATGLSLVYDTLMKSTEE------ELSASYGLLAEG 114
             GTFDTLNP   KG         +  G+S + + LM  T +      E ++SYGL+A  
Sbjct: 59  AFGTFDTLNPYTFKGSSPITTPNFQQYGISELNEPLMVGTGQYDPSGDEPTSSYGLIARS 118

Query: 115 VSYPDDIEKATFRLRQDAKWADGKPVTPEDVVFSFEKA-KDLSPQLATYYTHVTKAEVSG 173
           V Y +D     F LR +A+W DG+P+T  DV FS+    KD  P   T    V + ++ G
Sbjct: 119 VEYSEDRSWVVFNLRPEARWHDGQPITSADVAFSYRTLLKDGHPIYRTNLQEVQRVDILG 178

Query: 174 ERDITFTFDEKNNRELPQIVGQLLIVPKHWWEGTGPDGKPRDISRGTLEPVMGSGPYKIA 233
              I F F    N  L   +G++ ++PKH+W+        RD    T EP +GSGPY+I 
Sbjct: 179 PLRIRFVFKRAGNPLLILRLGEMPVLPKHYWQ-------KRDFKATTFEPPLGSGPYRIT 231

Query: 234 AVSPGSSVTYERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEAS 293
            V PG  + +ER  +YWGKD+ VN G  NF  + Y F+ D  V F+AFK+G  D   E  
Sbjct: 232 QVQPGRRLVFERVKNYWGKDLAVNRGKYNFNRVEYEFYRDATVAFEAFKAGEFDIYIEHQ 291

Query: 294 SSRWVTGYDFPAVKEGRVKKEELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAFDF 353
           +  W  GY+FPAV+ G V K ++P+   +    Q    N RR  F +P++R+AL    DF
Sbjct: 292 AKNWANGYNFPAVRRGEVIKAQIPHSIPTQ--TQGLFMNSRRAAFSDPRVRQALGLMLDF 349

Query: 354 EELNRTLAYGQFQRITSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAG 413
           E  NR L    ++R TS++  SE A+SGLPTG+E  +L   +DQ+P ++F+  Y+     
Sbjct: 350 EWTNRALFSSAYRRSTSYYPNSEFAASGLPTGKEWLLLAPFRDQLPAKLFSEPYKVSHTD 409

Query: 414 DPAKQRDNLREAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSGMERTILPYVQNLK 473
                R  LR+A+ L+ EAG++L G R+V++  GQQL ME L+ +  +ER + PYV+NL 
Sbjct: 410 GRGISRQTLRQALGLLAEAGWKLHGQRLVDSK-GQQLRMELLLVNPNLERILQPYVENLS 468

Query: 474 KIGINATIRTVDASQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLA 533
            IGI+A +RTVD +QY  R   FDFD+ +     + +PG EQ  ++ S+ A  +GS N A
Sbjct: 469 SIGIDARLRTVDRAQYKQRLDQFDFDMILMTLNQTLSPGLEQWLYFHSSQAATKGSKNYA 528

Query: 534 GIKNPAVDALVRKVIFAPNRDEQVAAARALDRVLLANSYVIPQFYRGEMFIAYWNTLIRP 593
           G+K+P VD L+  ++ A  RD+QVAAARALDRVL  + Y+IP +Y     +AY N     
Sbjct: 529 GVKDPVVDHLLDTLLAARTRDDQVAAARALDRVLSWHYYMIPNWYLDNHRLAYRNRFAF- 587

Query: 594 ENLPEYGVGFPDAWW 608
              P Y +G  ++WW
Sbjct: 588 VTTPPYTLGL-NSWW 601