Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 642 a.a., putative ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

 Score =  309 bits (791), Expect = 3e-88
 Identities = 192/570 (33%), Positives = 302/570 (52%), Gaps = 16/570 (2%)

Query: 44  KHPDGFDHFDYVNTKAPKGGTLRLSTS--GTFDTLNPLLAKGERATGLS-LVYDTLMKST 100
           ++   F HFDYVN  APKGG LR S    G FD + P + KG   + +  L+Y  L   +
Sbjct: 64  RYAASFRHFDYVNPSAPKGGILRRSAIEIGQFDHILPYIDKGIGVSEVDGLLYAPLAVRS 123

Query: 101 EEELSASYGLLAEGVSYPDDIEKATFRLRQDAKWADGKPVTPEDVVFSFEKAKDL-SPQL 159
            +E    YGL+A  +    + E   F +   A +ADG+PV  EDV F+F+      S + 
Sbjct: 124 YDEPYTVYGLIARRMERGPNDEWLRFDIDPRATFADGRPVRAEDVRFTFDLLMSKGSLKY 183

Query: 160 ATYYTHVTKAEVSGERDITFTFDEKNNRELPQIVGQLLIVPKHWWEGTGPDGKPRDISRG 219
            T +  V +  V     + F    ++ R L   +  L ++P+H       D + RD + G
Sbjct: 184 RTQFADVARVTVERLHSVRFDLKPEHGRTLALDLASLPVMPEH-------DLQQRDFANG 236

Query: 220 T-LEPVMGSGPYKIAAVSPGSSVTYERRDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEF 278
              +  +GSGPY+I  +  G S+T+ER   +W +D+  + G  NF  +   +F D +V  
Sbjct: 237 AGFDKPVGSGPYRIGRIDNGRSITFERDPAWWARDLPASRGRYNFDKLRIEYFGDTEVAR 296

Query: 279 QAFKSGTVDFRQEASSSRWVTGYDFPAVKEGRVKKEELPNIYRSVGIMQAFVPNMRREKF 338
           Q  K G  D+ +E S++ +  GY+   + +GR+++  L      V   Q FV N+ + +F
Sbjct: 297 QVLKGGGYDYNREFSATAYTLGYNGAQLDDGRLQRAHLGPAKPQVA--QGFVFNLDQPQF 354

Query: 339 QNPKLRKALNYAFDFEELNRTLAYGQFQRITSFFMGSELASSGLPTGRELEILQELKDQV 398
           ++ ++R+AL   +DFE  NR +    + R  S F  + LA+  LP   EL++L  L+ QV
Sbjct: 355 KDRRVRQALGMLWDFEWSNRQMMRNLYIRQQSVFSNTPLAARQLPDAGELKLLAPLRGQV 414

Query: 399 PPEVFTTEYRNPVAGDPAKQRDNLREAVKLMKEAGYELRGNRMVNAATGQQLDMEFLIDS 458
           P EVFTT +  PV       R    +A+ L+++AG+   G+R+VN+  G  L   FL   
Sbjct: 415 PDEVFTTVFTAPVTDGSGIIRQQQLQALALLEQAGWHPEGDRLVNSQ-GTPLAFTFLNGQ 473

Query: 459 SGMERTILPYVQNLKKIGINATIRTVDASQYTNRTRSFDFDVTIKLWATSANPGNEQADF 518
           +G+ER +LP+ +NL +IG+   IR VD++QY NR  + D+D+ +  +  + +PG E  ++
Sbjct: 474 AGLERLLLPWKRNLAQIGVTLNIRNVDSAQYVNRLMARDYDMIVTGYPVTLSPGAELYNY 533

Query: 519 WGSAAADRQGSNNLAGIKNPAVDALVRKVIFAPNRDEQVAAARALDRVLLANSYVIPQFY 578
           +GSAAA   GSNNL  +++PAVD L+  ++ A  + + +  A ALDRVL  N Y IP +Y
Sbjct: 534 FGSAAAHDPGSNNLMVLQDPAVDHLIDGLVRADTQADMLRHAHALDRVLQWNYYWIPNYY 593

Query: 579 RGEMFIAYWNTLIRPENLPEYGVGFPDAWW 608
                  +WN    P+    Y  G  D WW
Sbjct: 594 PPGSSTVWWNRFGLPKVQATYDEGL-DTWW 622