Pairwise Alignments

Query, 614 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 622 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score =  376 bits (965), Expect = e-108
 Identities = 219/583 (37%), Positives = 331/583 (56%), Gaps = 19/583 (3%)

Query: 12  IALAASALLIPAVASAQSTDVWRKGISTVGE-LKHPDGFDHFDYVNTKAPKGGTLRLSTS 70
           + L A ALL  A   A +T   +  ++  GE  K+P GF HFDY N +APKGGT+R S  
Sbjct: 8   LMLTALALLTGA---AGATAAPQHALTVYGEPAKYPAGFGHFDYTNPQAPKGGTMRRSAI 64

Query: 71  --GTFDTLNPLLAKGERATGLS-LVYDTLMKSTEEELSASYGLLAEGVSYPDDIEKATFR 127
             G FD L P + KG   T +  L+Y  L + + +E    YGL+AE +   +D     F 
Sbjct: 65  EIGHFDHLLPYIDKGIGVTQIDGLLYSPLAQRSLDEPYTVYGLVAEKMERSEDGLSLRFF 124

Query: 128 LRQDAKWADGKPVTPEDVVFSFEKAKDL-SPQLATYYTHVTKAEVSGERDITFTFDEKNN 186
           +   A++ADGKP+T EDV +++       S +  T +  V   E+     + F F    N
Sbjct: 125 INPKARFADGKPITAEDVRYTYNLLMTQGSLRYRTQFADVKGVEIEAPLTVRFDFKSNEN 184

Query: 187 RELPQIVGQLLIVPKHWWEGTGPDGKPRDISRGT-LEPVMGSGPYKIAAVSPGSSVTYER 245
           R LP  +  L + P+HWW       K RD + G   EP +GSGPY++  V  G S+T+ER
Sbjct: 185 RTLPLDIATLPVFPEHWW-------KSRDFAGGGGYEPPLGSGPYRVGKVDSGRSITFER 237

Query: 246 RDDYWGKDVNVNVGMNNFKTIAYTFFADQDVEFQAFKSGTVDFRQEASSSRWVTGYDFPA 305
             D+WGKD+ V+ G+ NF   +  +F D DV  Q  + G  D+ +E S++ +  GYD PA
Sbjct: 238 NGDWWGKDLPVSRGLYNFDHFSIEYFGDTDVARQVLRGGAYDYNREFSATGYSIGYDSPA 297

Query: 306 VKEGRVKKEELPNIYRSVGIMQAFVPNMRREKFQNPKLRKALNYAFDFEELNRTLAYGQF 365
           + +GR++K  L     +    Q FV N+++  FQ+ ++R+AL   +DFE  NR +    +
Sbjct: 298 LSDGRLQKAHLAT--EAPQSAQGFVFNLQKPMFQDRRVRQALAMLWDFEWSNRQMMRNVY 355

Query: 366 QRITSFFMGSELASSGLPTGRELEILQELKDQVPPEVFTTEYRNPVAGDPAKQRDNLREA 425
            R  S+F  ++LA+  LP  +EL+IL+ L+ QVP EVF+  +  P        RD   +A
Sbjct: 356 IRQQSYFSNTDLAARQLPDAQELKILEPLRGQVPEEVFSKVFEAPKTDGSGIIRDKQLQA 415

Query: 426 VKLMKEAGYELRGNRMVNAATGQQLDMEFLIDSSGMERTILPYVQNLKKIGINATIRTVD 485
           ++L+++AG++  G+++VN A G+ L   FL+  +GM+R +LPY + LK+IGI   IR +D
Sbjct: 416 LQLLEQAGWKPDGDQLVNGA-GEPLSFTFLVSQNGMDRLLLPYKRTLKQIGIELNIRRID 474

Query: 486 ASQYTNRTRSFDFDVTIKLWATSANPGNEQADFWGSAAADRQGSNNLAGIKNPAVDALVR 545
           ASQY NR  S D+D+ +  +  + +PG E  +++GSAAA+  G+NN   +KNPAVD L+ 
Sbjct: 475 ASQYVNRLMSRDYDMIVTGYPVTTSPGGELLNYFGSAAANDPGANNYMVLKNPAVDTLIN 534

Query: 546 KVIFAPNRDEQVAAARALDRVLLANSYVIPQFYRGEMFIAYWN 588
            +I A  + + +  A ALDRVL  N Y IP +Y       +WN
Sbjct: 535 GLIRASTQSDMLHYAHALDRVLQWNYYWIPNYYPPGTSTVWWN 577