Pairwise Alignments

Query, 323 a.a., ABC transporter, membrane spanning protein (sugar/ribonucleotide) from Agrobacterium fabrum C58

Subject, 314 a.a., Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1) from Variovorax sp. SCN45

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 60/243 (24%), Positives = 98/243 (40%), Gaps = 27/243 (11%)

Query: 11  LGSTVRLTIPLLFTALAGLFSERAGVFDIGLEGKMLAAAFASACVAYLTAN-PWAGLLAG 69
           L S ++   PL+       F   AG FD+     +       A +    A+  W  + A 
Sbjct: 34  LMSFLQRAAPLVILTCGASFVLIAGGFDLSSGALITLVVIGCALITNGDADMTWTAVAAA 93

Query: 70  IGVSILFSLIHGFAVITNRGNQIVSGVALNFIAAGLTVVLGQAWFGQGGRTPQLPGEGRF 129
             + +   L++G  V   +   I++ +       G+ +V    W G G  +  LP   R+
Sbjct: 94  YAMGLAVGLLNGLVVTRLKVPSIIATLGGLLSIKGIAMV----WSG-GAPSGYLPQNLRY 148

Query: 130 APIILPGADAMREVPFIGPLYANVISGNNILTYLAFLAVPLSWWVLYRTRFGLRLRAVGE 189
                 G   +REVP  G L   VI        +  + V L +W+++RT FG  +  +G+
Sbjct: 149 L-----GRGVLREVPLTGTLPIAVI--------VLAVFVALCFWLMHRTNFGRLVLMIGD 195

Query: 190 NPGAVDTAGISVTWMRYRAVIVAG--------FLCGFSGAYLAVAQSAAFIANMSAGKGY 241
           NP A + AG  V  +R  A +++          L GFSG  + V       A  +A  G 
Sbjct: 196 NPVAAELAGAPVRRVRVAAFVLSSLSAVTAGILLGGFSGVSVDVGTGYDLQAIAAAVIGG 255

Query: 242 IAL 244
           + L
Sbjct: 256 VVL 258