Pairwise Alignments

Query, 501 a.a., ABC transporter, nucleotide binding/ATPase protein (sugar/ribonucleotide) from Agrobacterium fabrum C58

Subject, 501 a.a., fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) from Escherichia coli BW25113

 Score =  294 bits (753), Expect = 4e-84
 Identities = 177/501 (35%), Positives = 280/501 (55%), Gaps = 11/501 (2%)

Query: 1   MDPAIELMGIDKKFGAVHANKNINLSVAKGTIHGIIGENGAGKSTLMSILYGFYQADAGE 60
           M+  ++L GIDK F  V A     L+V  G +  ++GENGAGKST+M +L G Y  DAG 
Sbjct: 1   MEALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGT 60

Query: 61  IRVNGKPVTIRDSQAAISAGIGMVHQHFMLVENFTVLENVMLGAEGGALLAR-GRAGARR 119
           +   GK  T    +++  AGIG++HQ   L+   T+ EN+ LG E      +        
Sbjct: 61  LLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYA 120

Query: 120 ELKRLEDDYGLEVDPDAVIEELPVGLQQRVEILKAMYRGAEILILDEPTGVLTPAEADHL 179
           E  +L     L    D ++ +L +G QQ VEI K +   ++++I+DEPT  LT  E + L
Sbjct: 121 EADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180

Query: 180 FKILGVLREQGKTIILITHKLREIMAITDSVSVMRRGEMVATRKTSETSVEELAELMVGR 239
           F+++  L+ QG+ I+ I+H+++EI  I D V+V R G+ +A R+ +  + + L E+MVGR
Sbjct: 181 FRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVGR 240

Query: 240 RVLLRVEKGETTPGDVLLSIRNLTVKDSRGVTMVDDVSLDVRAGEIVGIAGVAGNGQSEL 299
           ++  +    +  PGD+ L + NL          V+DVS  +R GEI+G++G+ G G++EL
Sbjct: 241 KLEDQYPHLDKAPGDIRLKVDNLCGPG------VNDVSFTLRKGEILGVSGLMGAGRTEL 294

Query: 300 LEAIAGIRKPYSGEIWVDGQKVDRPDPAILRKLGLAHIPEDRHHMGLVLKFEEYEN-SIL 358
           ++ + G     SG + +DG +V    P      G+ +I EDR   GLVL     EN S+ 
Sbjct: 295 MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLT 354

Query: 359 GYHHDERYGKGPFLNPEAIRKDAVEKIEKYDIRPPNPQLKTANFSGGNQQKIVVAREIER 418
              +  R G    L     ++   + I  ++++ P+ +      SGGNQQK+ +AR +  
Sbjct: 355 ALRYFSRAGGS--LKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKVAIARGLMT 412

Query: 419 DPKMLIIGQPTRGVDIGAIEFIHRRIIEMRDAGKAILLVSVELDEIRSLSDRIMVMFAGR 478
            PK+LI+ +PTRGVD+GA + I++ I + +  G +I+LVS E+ E+  +SDRI+VM  G 
Sbjct: 413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDRIIVMHEGH 472

Query: 479 VVGEKTAEAEEQTLGLMMAGI 499
           + GE T E   Q + LM A +
Sbjct: 473 LSGEFTREQATQEV-LMAAAV 492



 Score = 82.8 bits (203), Expect = 3e-20
 Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 13/228 (5%)

Query: 22  NINLSVAKGTIHGIIGENGAGKSTLMSILYGFYQADAGEIRVNGKPVTIRDSQAAISAGI 81
           +++ ++ KG I G+ G  GAG++ LM +LYG     +G + ++G  V  R  Q  ++ GI
Sbjct: 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329

Query: 82  GMVHQHFM---LVENFTVLENVMLGA------EGGALLARGRAGARRELKRLEDDYGLEV 132
             + +      LV   +V EN+ L A       GG+L       A  +  RL   + ++ 
Sbjct: 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRL---FNVKT 386

Query: 133 DP-DAVIEELPVGLQQRVEILKAMYRGAEILILDEPTGVLTPAEADHLFKILGVLREQGK 191
              +  I  L  G QQ+V I + +    ++LILDEPT  +       +++++   +  G 
Sbjct: 387 PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGL 446

Query: 192 TIILITHKLREIMAITDSVSVMRRGEMVATRKTSETSVEELAELMVGR 239
           +IIL++ ++ E++ ++D + VM  G +       + + E L    VG+
Sbjct: 447 SIILVSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGK 494