Pairwise Alignments

Query, 998 a.a., DNA polymerase I from Agrobacterium fabrum C58

Subject, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

 Score =  738 bits (1906), Expect = 0.0
 Identities = 441/1008 (43%), Positives = 593/1008 (58%), Gaps = 114/1008 (11%)

Query: 7   LFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVTPTHFAV 66
           L LVDGS +++RAFHA+PPL   S G+P  AV G  NML  L K   ++        FAV
Sbjct: 6   LVLVDGSSYLYRAFHALPPLTT-SKGMPTGAVKGVLNMLKSLRKQYPDS-------LFAV 57

Query: 67  IFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEADDIIAT 126
           +FD    TFR+ ++  YKANR + P+DL  Q   +  + +A   P +  EG EADD+I T
Sbjct: 58  VFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGT 117

Query: 127 YARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPEKMIDLQ 186
            AR + A+G  V I + DKD+ QLV  ++ + + M    + V  V EK+GVGPE +ID  
Sbjct: 118 LARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFL 177

Query: 187 AMTGDSTDNVPGIPGIGPKTAAQLL--------EEYGDLD---TLLARAGEIKQQKRREN 235
           A+ GD  DN+PG+PG+G KTA  LL        + Y +LD    L  R  +    K  E+
Sbjct: 178 ALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEH 237

Query: 236 IIANAELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEAT 295
                + A LS +L  ++ DVPL+  +E LV    +   L+A    MEF +         
Sbjct: 238 ----RDAAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKS--------- 284

Query: 296 DSDASAIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGST 355
                          W A+     L   AA    DV        A AV PA ++  +   
Sbjct: 285 ---------------WVAE-----LQRDAAKAGDDV--------APAVEPAVKVEAK--- 313

Query: 356 PADLTTARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAEL 415
                                Y  I D A  D W+   R+A + AFDTETT LD  QA+L
Sbjct: 314 ---------------------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQL 352

Query: 416 VGFSLAIADNGKDASGTDIRAAYVPLTHK-TGSGGDLFSDGIKLAEGQAPFAEALERLKD 474
           VG S A+  +          AAYVPL H   G+   L  + + LA            LK 
Sbjct: 353 VGLSFAVEPH---------EAAYVPLAHDYEGAPVQLDREAVLLA------------LKP 391

Query: 475 LLEDEAVLKVAQNLKYDYLLMKRHG--VVMRSFD-DTMLISYVLEAGKTTHGMDTLSERW 531
           LLED A  KV QN KYD  ++      + MR    DTML SYVL +  T H MD+L++++
Sbjct: 392 LLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451

Query: 532 LGHTPIAYKDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLV-SERLTKV 590
           L HT IA++D+ G G   +TF+ +N+DKA  YAAEDAD+TLRL  AL+ RL  +  +  V
Sbjct: 452 LDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPV 511

Query: 591 YERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQ 650
              +E PLVPVLA +E +G  VD ++L   SGEL  K A  E   YELAGE FN+GSPKQ
Sbjct: 512 LMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQ 571

Query: 651 LGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDAL 710
           LG IL+ ++G+P  SKT  GQ ST+  VL++LA +G  LP  ++ +R L+KLKSTYTD L
Sbjct: 572 LGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKL 631

Query: 711 PSYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSA 770
           P  I+P T R+HTSY  A   TGRLSSS+PNLQNIP+RTAEGR+IR AFI++PG+KLL+A
Sbjct: 632 PGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAA 691

Query: 771 DYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGI 830
           DYSQIELR++AH+A    L +AF N +D+H  TA+E+FGV +E + ++ RR AKAINFG+
Sbjct: 692 DYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGL 751

Query: 831 IYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAH 890
           IYG+SAFGLA Q+ + R ++ DYI +YF R+PG+  YME T+A A E G+VET+FGRR +
Sbjct: 752 IYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLY 811

Query: 891 YPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDEL 950
            P+I + NP+++   ER AINAP+QG+AADII+RAM++++  L    L AR++LQVHDEL
Sbjct: 812 LPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDEL 871

Query: 951 IFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDEAH 998
           + EV E  +++    +   M  AA     + VPL V+A    NWDEAH
Sbjct: 872 VLEVREDLVQQVKDEIRQHMSQAA----QLDVPLLVEAGVGANWDEAH 915