Pairwise Alignments

Query, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

Subject, 314 a.a., tRNA pseudouridine(55) synthase TruB from Escherichia coli ECRC100

 Score =  182 bits (462), Expect = 9e-51
 Identities = 114/317 (35%), Positives = 166/317 (52%), Gaps = 13/317 (4%)

Query: 1   MSKPRKQQHRKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGM 60
           MS+PR+      +GR I+G L+LDKP    S +A+ K+K ++NA +AGH G LDPLA+GM
Sbjct: 1   MSRPRR------RGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGM 54

Query: 61  LPIALGDATKTVPYVMDGRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPN 120
           LPI LG+ATK   Y++D  K Y      G++  T D +G++VE        + +   L  
Sbjct: 55  LPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVTFSAEQLAAALDT 114

Query: 121 YTGVIMQTPPQFSAIKIAGERAYDLARDGETVEIPAREVEIHRLTLLACPDADTAHFEVE 180
           + G I Q P  +SA+K  G++ Y+ AR G  V   AR + ++ L L    + +    E+ 
Sbjct: 115 FRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYEL-LFIRHEGNELELEIH 173

Query: 181 CGKGTYVRALARDMGRDLGCFGHISELRRTMVAPFGEDMMVPLETLTAL-EAIEDRD-ER 238
           C KGTY+R +  D+G  LGC  H+  LRR  V+ +  + MV LE L  L E  E +D   
Sbjct: 174 CSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEHLRELVEQAEQQDIPA 233

Query: 239 LEALDAFLIDTAEALSSLPRLIINDDQAHRLKMGNPILLRGRDAPANHPEAYATAQ-GKL 297
            E LD  L+      S  P + +    +   K GNP+   G  AP          + GK 
Sbjct: 234 AELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSG--APLEGLVRVTEGENGKF 291

Query: 298 VAIGEI-GEGEFRPKRV 313
           + +GEI  EG   P+R+
Sbjct: 292 IGMGEIDDEGRVAPRRL 308