Pairwise Alignments

Query, 713 a.a., polyribonucleotide nucleotidyltransferase from Agrobacterium fabrum C58

Subject, 576 a.a., 30S ribosomal protein S1 from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 46/149 (30%), Positives = 74/149 (49%), Gaps = 8/149 (5%)

Query: 561 IPVDKIREVIGSGGKVIREIVEKTGAKINIEDDGTVKIASASGKEIEAARKWIHSIVAEP 620
           + V  +R+     GK +   V K   K N   +  V   S    E  A R+ +   + E 
Sbjct: 154 VDVRPVRDTTHLEGKELEFKVIKLDQKRN---NVVVSRRSVLEAENSAEREALLETLQE- 209

Query: 621 EVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTSDVVKEGDKVWVKLMGF 680
             GQ  +G V    D+GAFV+  G  DGL+HI+ +A +R+   S++V  GD+V V+++ F
Sbjct: 210 --GQQVKGIVKNLTDYGAFVDL-GGIDGLLHITDMAWKRIKHPSEIVNVGDEVDVRVLKF 266

Query: 681 D-ERGKVRLSMKVVDQATGKEVAADKKDG 708
           D ER +V L +K + +     + A   +G
Sbjct: 267 DRERNRVSLGLKQMGEDPWVAITARYPEG 295



 Score = 44.3 bits (103), Expect = 2e-08
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 615 SIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLASERVAKTSDVVKEGDKVW 674
           + VA  + G I +G V +    GA V      +  +  S+++ +RV    +V+KEG+++ 
Sbjct: 461 NFVAVNDKGAIVKGIVKEVDAKGAIVTLADDIEATLKASEISRDRVEDARNVLKEGEEIE 520

Query: 675 VKLMGFDERGKV-RLSMKVVDQATGKEVAADKKDG-EAAAE 713
            K++  D + +V  LS+K  D A  +E     K+  EAAA+
Sbjct: 521 AKIISVDRKSRVISLSIKSKDDAEEREAIQSLKNAPEAAAD 561



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 623 GQIYEGTVVKTADFGAFVNFFGARDGLVHISQLA-SERVAKTSDVVKEGDKVWVKLMGFD 681
           G    GT+    DFG F+   G  DGLVH+S ++ +E   +     K+GD++   ++  D
Sbjct: 382 GDKITGTIKSITDFGIFIGLDGGIDGLVHLSDISWNETGEEAVRRFKKGDELETVILSVD 441

Query: 682 -ERGKVRLSMKVVD 694
            ER ++ L +K ++
Sbjct: 442 PERERISLGIKQLE 455



 Score = 38.1 bits (87), Expect = 1e-06
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 612 WIHSIVAEPEVGQIYEGTVVKTADFGAFVNFFGARDGLVHISQLA-SERVAKTSDVVKEG 670
           W+      PE G   +  V    D+G F       +GLVH+S++  + +    S VV+ G
Sbjct: 285 WVAITARYPE-GTRVQARVTNLTDYGCFAELEEGVEGLVHVSEMDWTNKNIHPSKVVQVG 343

Query: 671 DKVWVKLMGFD-ERGKVRLSMK 691
           D+V V ++  D ER ++ L +K
Sbjct: 344 DEVEVMVLDIDEERRRISLGIK 365