Pairwise Alignments

Query, 375 a.a., recF-like protein from Agrobacterium fabrum C58

Subject, 367 a.a., recombinase RecF from Pseudomonas simiae WCS417

 Score =  111 bits (277), Expect = 4e-29
 Identities = 106/374 (28%), Positives = 160/374 (42%), Gaps = 18/374 (4%)

Query: 5   VSLSRLKLTDFRNYAAAALVLDERHVVLTGDNGSGKTNLLEAVSFLSPGRGLRRAVLSDV 64
           +SLSR+ +T  RN     L    R  +L G NGSGKT++LEA+  L   R  R A L  V
Sbjct: 1   MSLSRVSVTAVRNLHPVTLSPSPRINILHGANGSGKTSVLEAIHLLGLARSFRSARLLPV 60

Query: 65  TRVGAEATGFSIFADVD-GMDGEVAIGTGIEGDGEVVSRRLRLNGTPVKSVDELTDHLRV 123
             +  E    ++F  V+    G  ++G   +  GE    ++R++G   +S  +L + L +
Sbjct: 61  --IQYEQLACTVFGQVELAEGGHSSLGISRDRGGEF---QIRIDGQNARSAAQLAEILPL 115

Query: 124 LWLTPAMDGLFTGSSSDRRRFLDRLVLSLDPGHGRRASDFEKAMRGRNRLLSEGRFDPVW 183
             + P    L  G+   RR+FLD  V  ++P         +KA+R RN  L  G  D   
Sbjct: 116 QLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMATWQRLQKALRQRNSWLRHGTLDAAS 175

Query: 184 LDGIEKQMAELGISMAVARYEMLGLLKTLIEGRAGNAAFPSATLSLAGFMDDRLNRPAVD 243
               ++++      +   R   +  LK + E         S  L L G           D
Sbjct: 176 QAAWDRELCLASDEIDEYRRAYIKALKPVFEQTL------SELLELEGLTLSYYR--GWD 227

Query: 244 LEDEYGLMLRDGRYRDAAAGRTLDGPHRVDLFVRHAEKNMEAERCSTGEQKALLVGLVLA 303
            E E   +L     RD   G T  GP R DL +R    N  A+  S G+QK ++  L +A
Sbjct: 228 KERELSAVLATSLQRDQQIGHTQAGPQRADLRLRLGAHN-AADILSRGQQKLVVCALRIA 286

Query: 304 HAQLTANMTGYAPVLLLDEIAAHLDEGRRAALFDLIHALGGQSFMTGTDAAMFSALGER- 362
              L +       + L+D++ + LDE  R AL  L+  L  Q F+T  D  +     +  
Sbjct: 287 QGHLVSQARRGQCIYLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTE 346

Query: 363 --AQFFNVSHGGIT 374
                F+V  G IT
Sbjct: 347 TPVALFHVEQGRIT 360