Pairwise Alignments

Query, 360 a.a., ABC transporter, membrane spanning protein (sugar) from Agrobacterium fabrum C58

Subject, 329 a.a., ribose ABC transporter permease from Serratia liquefaciens MT49

 Score =  166 bits (421), Expect = 6e-46
 Identities = 106/306 (34%), Positives = 166/306 (54%), Gaps = 16/306 (5%)

Query: 52  LIVLVLSLAIFGMTLGGKFFSAFSLTLILQQVAIVGIVGAAQSLVILTAGIDLSVGAIMV 111
           L +L+L +A+FG  +   FF+  +L  I +Q +I  ++ A  + +ILT GIDLSVG+++ 
Sbjct: 30  LPILILIVAVFGF-VAPNFFTDANLLNIARQASINIVLAAGMTFIILTGGIDLSVGSMLG 88

Query: 112 LSSVVMGQFTFRYGLPAELSIICGLAVGAFCGFINGVLVSRMRLPPFIVTLGMWQIVLAT 171
            ++VV    +   G+ A +SI   L  G   G  NG LV+   LPPFIVTLG +  +   
Sbjct: 89  TTAVVAMAVSLMPGM-AGMSIPLALLAGLGMGLFNGFLVAYAGLPPFIVTLGTYTALRGA 147

Query: 172 NFLYSANETIRAQDIVQQAPILQFFGNNIRIGNAVF---TYGVLAMVLLVALLWYVLNRT 228
            +L +   TI   +I  +            IGNA      + V+    ++A+ W++L RT
Sbjct: 148 AYLLADGTTIINSNISFEW-----------IGNAYLGPIPWLVIIAFAVIAVCWFILRRT 196

Query: 229 AWGRHLYAVGDDPDAAELAGVNVKRMLTTVYTLSGLICAFAGWALIGRIGSVSPTAGQFA 288
             G H+YAVG +  AA L G+ V  +L  VY +SGL+    G     R+ S +   G   
Sbjct: 197 TLGVHIYAVGGNMQAARLTGIKVGAVLLFVYGMSGLLSGLGGVMSASRLYSANGNLGMGY 256

Query: 289 NIESITAVVIGGISLFGGRGSIMGMIFGALIVGVFSLGLRLIGTDPQWTYLLIGVLIILA 348
            +++I AV++GG S  GG G+I G + GALI+   + G+ L+G    W  ++ G +II+A
Sbjct: 257 ELDAIAAVILGGTSFVGGIGTITGTLVGALIIATLNNGMTLMGVSYFWQLVIKGAVIIIA 316

Query: 349 VAIDQW 354
           V ID++
Sbjct: 317 VLIDKY 322