Pairwise Alignments

Query, 360 a.a., ABC transporter, membrane spanning protein (sugar) from Agrobacterium fabrum C58

Subject, 321 a.a., ribose ABC transporter permease from Escherichia coli ECOR38

 Score =  181 bits (460), Expect = 2e-50
 Identities = 108/301 (35%), Positives = 175/301 (58%), Gaps = 6/301 (1%)

Query: 52  LIVLVLSLAIFGMTLGGKFFSAFSLTLILQQVAIVGIVGAAQSLVILTAGIDLSVGAIMV 111
           LI L++ +AI   TL   FF+  +L  ILQQ ++  I+    +LVILT+GIDLSVG+++ 
Sbjct: 23  LIALLVLIAIVS-TLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 81

Query: 112 LSSVVMGQFTFRYGLPAELSIICGLAVGAFCGFINGVLVSRMRLPPFIVTLGMWQIVLAT 171
           L+  V         + A +++   LA+GA  G + GV+V++ RL  FI TL M  ++   
Sbjct: 82  LTGAVAASIV-GIEVNALVAVAAALALGAAIGAVTGVIVAKGRLQAFIATLVMMLLLRGV 140

Query: 172 NFLYSANETIRAQDIVQQAPILQFFGNNIRIGNAVFTYGVLAMVLLVALLWYVLNRTAWG 231
             +Y+    +      + A +  +FG    +G     + ++ +V L A  WY+L+ T  G
Sbjct: 141 TMVYTNGSPVNT-GFTENADLFGWFGIGRPLGVPTPVW-IMGIVFLAA--WYMLHHTRLG 196

Query: 232 RHLYAVGDDPDAAELAGVNVKRMLTTVYTLSGLICAFAGWALIGRIGSVSPTAGQFANIE 291
           R++YA+G +  A  L+G+NV ++   VY+L GL+ + AG   + R+ S  PTAG    ++
Sbjct: 197 RYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELD 256

Query: 292 SITAVVIGGISLFGGRGSIMGMIFGALIVGVFSLGLRLIGTDPQWTYLLIGVLIILAVAI 351
           +I AVV+GG SL GG+G I+G + GALI+G  + GL L+G    +  ++  V+I+LAV +
Sbjct: 257 AIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLV 316

Query: 352 D 352
           D
Sbjct: 317 D 317