Pairwise Alignments

Query, 340 a.a., ABC transporter, substrate binding protein (sugar) from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Escherichia coli ECRC99

 Score =  109 bits (272), Expect = 1e-28
 Identities = 89/297 (29%), Positives = 140/297 (47%), Gaps = 21/297 (7%)

Query: 5   VSALLGALALGVSFASAASAADTSVCLITKTDTNPFFVKMKEGATAKAKELGVTLKSYAG 64
           ++ L+ A+AL  + ++ A A DT + L+  T  NPFFV +K+GA  +A +LG  L     
Sbjct: 6   LATLVSAVALSATVSANAMAKDT-IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS 64

Query: 65  KIDGDSESQVAAIETCIADGAKGILITASDTKGIVPAVQKARDAGLLVIALDTPLEPVDA 124
           +   +   ++A ++     G K +LI  +D+  +  AV+ A  A + VI LD      + 
Sbjct: 65  Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQATKGEV 122

Query: 125 ADSTFATDNLLAGELIGKWAAGTLGDKAKDAKIAFLNLTPSQPTVDVLRNQGFMKGFGID 184
             S  A+DN+L G++ G + A   G+ AK  ++  +  T +       R +GF +     
Sbjct: 123 V-SHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARE----RGEGFQQAVAAH 177

Query: 185 VKDINKIGDEDDKRIVGHDVTNGNEEGGRSAMENLLQKDPTINVVHTINEPAAAGAYEAL 244
             ++      D  R  G +V           M+NLL   P +  V   N+  A GA  AL
Sbjct: 178 KFNVLASQPADFDRTKGLNV-----------MQNLLTAHPDVQAVFAQNDEMALGALRAL 226

Query: 245 KAVGREKDVLIVSVDGGCPGVKNVAEGVIGATSQQYPLLMAALGVEAVKKFADTGEK 301
           +  G+  DV++V  DG   G K V +G + AT  Q P  + A GVE   K    GEK
Sbjct: 227 QTAGK-SDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVL-KGEK 281