Pairwise Alignments

Query, 340 a.a., ABC transporter, substrate binding protein (sugar) from Agrobacterium fabrum C58

Subject, 296 a.a., ribose ABC transporter substrate-binding protein RbsB from Dickeya dianthicola ME23

 Score =  114 bits (285), Expect = 3e-30
 Identities = 90/300 (30%), Positives = 144/300 (48%), Gaps = 21/300 (7%)

Query: 5   VSALLGALALGVSFASAASAADTSVCLITKTDTNPFFVKMKEGATAKAKELGVTLKSYAG 64
           ++ L+ A+AL  + ++ A A DT + L+  T  NPFFV +K+GA  +A +LG  L     
Sbjct: 6   IATLVSAVALSAAVSANALAKDT-IALVVSTLNNPFFVSLKDGAQKEADKLGYNLVILDS 64

Query: 65  KIDGDSESQVAAIETCIADGAKGILITASDTKGIVPAVQKARDAGLLVIALDTPLEPVDA 124
           +   +   +++ ++     G K +LI  +D+  +  AV+ A  A + VI LD      + 
Sbjct: 65  Q--NNPAKELSNVQDLTVRGTKLLLINPTDSNAVGNAVKLANQAKIPVITLDRVAASGEV 122

Query: 125 ADSTFATDNLLAGELIGKWAAGTLGDKAKDAKIAFLNLTPSQPTVDVLRNQGFMKGFGID 184
             S  A+DN   G++ G + A  LG+ AK  ++  L  T +       R  GF+K     
Sbjct: 123 I-SHVASDNAFGGKVAGDFIAKKLGEGAKVIQLEGLAGTSAARE----RGAGFIKS---- 173

Query: 185 VKDINKIGDEDDKRIVGHDVTNGNEEGGRSAMENLLQKDPTINVVHTINEPAAAGAYEAL 244
                   +++   ++     + +   G + M+NLL   P +  V   N+  A GA  AL
Sbjct: 174 -------AEKNKFAMLASQPADFDRTKGLNVMQNLLTAHPDVKAVFAQNDEMALGALRAL 226

Query: 245 KAVGREKDVLIVSVDGGCPGVKNVAEGVIGATSQQYPLLMAALGVEAVKKFADTGEKPKP 304
           +  GR+ DVL+V  DG   GVK V  G + AT  Q P  +  +GVE   K    GEK +P
Sbjct: 227 QTAGRD-DVLVVGFDGTADGVKAVEGGKLAATVAQRPEQIGIIGVETADKVL-KGEKVQP 284