Pairwise Alignments

Query, 340 a.a., ABC transporter, substrate binding protein (sugar) from Agrobacterium fabrum C58

Subject, 317 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  114 bits (285), Expect = 3e-30
 Identities = 101/325 (31%), Positives = 149/325 (45%), Gaps = 30/325 (9%)

Query: 6   SALLGALALGVSFASAA--SAADTSVCLITKTDTNPFFVKMKEGATAKAKELGVTLKSYA 63
           SA L A  L  +  SA    AA+ ++ L+       FF +M EGA   AKE GV L  + 
Sbjct: 10  SAALAATVLAGATLSAGLVQAAEKTIALVQINQQALFFNQMNEGAEKAAKEAGVKLVIF- 68

Query: 64  GKIDGDSESQVAAIETCIADGAKGILITASDTKGIVPAVQKARDAGLLVIALDTPLEPVD 123
              + D  +Q +AIET I     GI + A D  GI+PAV++A  A + V+A+D  L P  
Sbjct: 69  -NANNDPAAQNSAIETYIQQKVDGIAVVAIDVNGIMPAVKQAAAANIPVVAIDAIL-PEG 126

Query: 124 AADSTFATDNLLAGELIGK----WAAGTLGDKAKDAKIAFLNLTPSQPTVDVLRNQGFMK 179
              +    DN  AG  +GK    +    +G KAK   +  LN       +  +R     K
Sbjct: 127 PQKAQIGVDNGKAGADMGKFFLDYVKSDMGGKAKIGVVGALN-----SFIQNIRQ----K 177

Query: 180 GFGIDVKDINKIGDEDDKRIVGHDVTNGNEEGGRSAMENLLQKDPTINVVHTINEPAAAG 239
           GF   +KD  K G      + G +V    ++   SA ENL+  +P +  ++   EPA  G
Sbjct: 178 GFEDTIKD--KTGITTAGVVDGQNV----QDTALSAAENLITGNPDMTAIYATGEPALLG 231

Query: 240 AYEALKAVGREKDVLIVSVDGGCPGVKNVAEGVIGATSQQYPLLMAALGVEAVKKFADTG 299
           A  A+++  ++KD+ +   D     +  +  G +    QQ P  M A  V+A+K  AD G
Sbjct: 232 AVAAVESQSKQKDIKVFGWDLTKQAITGIDAGYVAGVIQQDPAEMGAAAVKALKTVADGG 291

Query: 300 EKPKPTAGKNFFDTGVTLVTDKPVK 324
              K  A        VT+VT   V+
Sbjct: 292 TVEKTIA------VPVTIVTKANVE 310