Pairwise Alignments

Query, 828 a.a., helicase from Agrobacterium fabrum C58

Subject, 1301 a.a., ATP-dependent helicase HrpA from Pseudomonas putida KT2440

 Score =  257 bits (656), Expect = 3e-72
 Identities = 162/462 (35%), Positives = 250/462 (54%), Gaps = 20/462 (4%)

Query: 15  LPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGDGKIILLEPRRLAAR 74
           LP++A   +I + LA  +  V++   G+GKTT +P   L       G I   +PRR+AAR
Sbjct: 70  LPIAAKRDEIKKALAENQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAHTQPRRIAAR 129

Query: 75  AAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPELSGVSTVIF 134
           + A R+AE L   +G  VGY++R +++  S T ++++T+G+       D  L    T+I 
Sbjct: 130 SVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRFLERYDTIIV 189

Query: 135 DEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALMGDAPVIQSLGRTFP 194
           DE HERSL+ DF L   L      R DL++++ SAT+D+ER       AP+I+  GRTFP
Sbjct: 190 DEAHERSLNIDFLLGY-LKTLLHRRPDLKLIITSATIDLERFSRHFDGAPIIEVSGRTFP 248

Query: 195 IDIRY-----EERWQG------IHVDEKVAKAITEAHASET------GSILAFLPGQAEI 237
           +D  Y     E+  +G      + VD+ +   + E    E       G +L FLPG+ EI
Sbjct: 249 VDTWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSEGKGPGDVLIFLPGEREI 308

Query: 238 TRTASRLEGRFPDDTDIIPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVR 297
              A  L       T+I+PLY  LS  EQ    +P  G  R++VLAT++AETS+T+ G+R
Sbjct: 309 RDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHTG--RRVVLATNVAETSLTVPGIR 366

Query: 298 VVIDSGLQRLPVFEPATGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALN 357
            VID+G  R+  +     + RL    VS+ASA+QR GR GR EPGI +RL+ +    +  
Sbjct: 367 YVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEEDFNSRP 426

Query: 358 AFTPPQILASDLSGLALDLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGALDNSGGL 417
           AFT P+IL ++L+ + L + H  +    A  F++ P   A+ +   LL+ L A++    L
Sbjct: 427 AFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAVNRENQL 486

Query: 418 TRQGHLMRGLSLPPRLAAMVIASAEEGAGKKAAMLAVMLTEQ 459
           T  G  +  L + PRL  M++  A  G+ ++  ++   L+ Q
Sbjct: 487 TPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQ 528