Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1086 a.a., UvrD/REP helicase from Variovorax sp. SCN45

 Score =  183 bits (464), Expect = 8e-50
 Identities = 300/1190 (25%), Positives = 473/1190 (39%), Gaps = 207/1190 (17%)

Query: 28   LASDPASSAWVSANAGSGKTHVLTQRVIRLLL----AGCRPSAILCLTYTKAAASEMSSR 83
            +A DP  S  V A AG+GKT +L  R++R LL    + C P  IL +T+TK AA EM  R
Sbjct: 21   VACDPRRSVAVEACAGAGKTWMLVSRILRALLEEGDSACEPHEILAITFTKKAAGEMRER 80

Query: 84   VFDRLAEWATLPDSDLKDRITTIEGKVPDRIKLAEARR--LFAKALETPGGLKIQTIHAF 141
            +   L ++      +L  ++  + G  P     A  R   L+ + LE    ++ +T HA+
Sbjct: 81   LDQWLEDFVERTPEELVAQLV-MRGVEPAAALAAVPRLKGLYRRLLEGGRPVQFRTFHAW 139

Query: 142  CEALLHQFPL----EANVAGHFSVLDDRAATTLLAEARRSLLTAVSTEDDAELVQALAYV 197
               LL   PL    E  +  ++ +L+D A     +   R    AV+ + +A         
Sbjct: 140  FAGLLRNAPLAVLRELGLPSNYELLEDDAEAR--SHTWRPFFEAVTADRNA--------- 188

Query: 198  LDLADESGLEALLSAIIANRSALRSFLHEAKQSGGLDVRLRQEMQIAAGETEETAAEAFW 257
              LAD   + A        RS     L EA          R E  +A  E       AF+
Sbjct: 189  --LADYYAVVAT-----HGRSQTAKALGEALSK-------RVEFSLADAENAVQHFSAFY 234

Query: 258  PLPGLSGLVLDTYLTLADEVGGSRV----IEVAYAL-REAKRQPDPVRRM--------EL 304
            P   L GL   T     D + GS V    ++ A AL +E+ + P              E 
Sbjct: 235  P--SLDGLEEPT-----DALRGSAVRQRWLDRAAALGKESNKTPQKAAEAIIDIFGTGEP 287

Query: 305  IEAALLTAKGEKKSDAYV-----INKGMQK-----SAPDLVDALTLARDHVVACRNRYRL 354
               AL  A    + + +V     +NK +QK      A   +  L  A+    A   + R+
Sbjct: 288  EAGALPAALAHLRKNFFVATEDRLNKNLQKFPAAQEAEAELQVLCGAQAQHAAWLYQQRM 347

Query: 355  VRMLVATKSALVLAERLIGDFEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQG 414
             R          L   LI  F D+K+    +D  D+ + A  LL +     WV  +LD  
Sbjct: 348  TR----------LTRILIAAFADVKRAHGWVDMNDVEQAAQLLLGQSALSGWVQERLDAR 397

Query: 415  IDHILVDEAQDTSPVQWSIIQSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPER 474
            I H+L+DE QDT+P+QW  +    +  + G   R  R  +F VGD KQSIY F+ A P+ 
Sbjct: 398  IAHLLIDEFQDTNPLQWQALYGWLS-AYTGAQGRAPR--VFIVGDPKQSIYRFRRAEPQV 454

Query: 475  FSQERDETKRRVDQVEQAFHRIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEH 534
            F   +   +  +D        +    + R+   V+  V+      ++A           +
Sbjct: 455  FIAAKKFVREGLDG-----ELLNCDHTHRNARAVVGLVNSAMLAAQDAGEFDG------Y 503

Query: 535  RSNRAGHPGTVEVWDMVAPETTEDEEDWTAPFDAL--RESAPAT--IVARRIAARIADMI 590
            R++        E+  + A +            DAL   E+APA   ++  R +     ++
Sbjct: 504  RAHTTERKDEGELLKLPAIDR-----------DALGAAEAAPADDGMLHWRDSLVTPRVL 552

Query: 591  GNQTIIEKGVERAVE-----------PGDILVLVRKRAAFVNALTRELKRRKNIPVAGAD 639
              + +++K  E+A +           P  I+VL R+R+    +  ++  R+++IPV   +
Sbjct: 553  PEEQLLQKECEQAAQWVAQRIADGTPPRQIMVLARRRSRL--SAMQDALRQRHIPVQQPE 610

Query: 640  RLRLTDHIAVQDLLALGRFVVLPEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESV-W 698
            +  L D   VQD++AL   +V P  DLSLA  LKSP+F + +D + ++A  + E  S  W
Sbjct: 611  KNELHDAPEVQDVVALIDALVSPAHDLSLARALKSPVFGIGDDALVQLALRQRERPSFNW 670

Query: 699  QRLQVLSGEETSRLSIVTDKLRHFISLSKTATVHDFFAAVLTLHDGRKKF----LGRLGN 754
              L   S +  + L+    KLR +     T   HD   A+    D   KF       +  
Sbjct: 671  FSLIQKSEDLPAELTEAGVKLRKWQRWLMTLPPHDALDAIFNDGDLLAKFGAAVPAPMRQ 730

Query: 755  EASDVLDEFLSFALDHERTGLPGLQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGL 814
             A   L   L+ +LD +        A +  L             D   V+++TVH +KGL
Sbjct: 731  SALANLRGVLTASLDIDGARFTTPYALVRSLRAGGVRAPSVAAPD--AVQLLTVHGAKGL 788

Query: 815  EAPVVFVVDGGSKAFNHSHVPKLRFVEGDG-DAFP---VWLPGSGFSNHLIRSDEERLKT 870
            EA  V ++D  +       +  L  VE  G D+ P   V+L           +  E  + 
Sbjct: 789  EADTVLMLDCDAPPPRAQTMGVL--VEWKGSDSAPTRFVFLASEKTPPACAAALLEEEQR 846

Query: 871  AAEDEYRRLLYVAMTRAADHLVVCGYRGQKENPECWHAIVKAALAENQDHCQPQAFSADG 930
            A   E    LYVA TRA + LV+   R  + N   W                        
Sbjct: 847  ARHREELNGLYVATTRARERLVLSSVRPARANEGSW------------------------ 882

Query: 931  EEWQGLVWRKSEARPALAPHKPAEPQQEEDHTLPPGLLAPLPALPSLPRPLSPSGAGTII 990
                   W + E           EP + ++         PL ALP      + SGAG+  
Sbjct: 883  -------WTRLEPL--------CEPTEADE---------PLVALP------TESGAGSFS 912

Query: 991  DDGADDLAVRSPLFGEKTEASSLALQR-----GKLVHRMLQ-ALPDFAESEREEAARRYA 1044
                 +  V   +   +  A++  +       G+ +HR+L+ A+P       E     + 
Sbjct: 913  MKKMPEAPVPVEVPSTRKAAATATVDARAAAFGQAMHRLLEWAVPG------EPLPAAHV 966

Query: 1045 ERAARFWPATDRERLIQAVLRVLSEPAVQPAFSANSRAEVSIMGTMTLGRQHYAVSGRID 1104
              AAR +   D ++   A        A + A+  + R        +TL   H   + RID
Sbjct: 967  RAAAREF-MLDAQQARGAAALAQRIRAGEGAWVWDDRRVDWHGNEVTL--VHEGETLRID 1023

Query: 1105 RLAVERDRVI--LVDYKTNRVPPREARELPFSHVAQLAIYREILAPLYPG 1152
            RL  ERD     ++DYK+   P R+A     + +AQ+  YR  +   YPG
Sbjct: 1024 RLVRERDGGAWWILDYKSAARPERDA-----ALIAQMQRYRAAVQHAYPG 1068