Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score = 96.7 bits (239), Expect = 6e-24
 Identities = 136/536 (25%), Positives = 220/536 (41%), Gaps = 117/536 (21%)

Query: 375 FEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQWSII 434
           +E   ++   +DF +L+ RA +L  RD  G   HY+  +   H+LVDE QDT+ VQ++ +
Sbjct: 180 YEQACERAGVIDFSELLLRALDLW-RDHPGLLEHYQ--RRFRHVLVDEFQDTNAVQYAWL 236

Query: 435 QSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQVEQAFH 494
           + LA           G  +L AVGD+ QSIY ++GA+ E   Q   +             
Sbjct: 237 RLLAR----------GGDSLMAVGDDDQSIYGWRGAKIENIHQYTADFPDA--------E 278

Query: 495 RIRLPLSFRSTEDVLAAVDQVFSDPKNASGLSADNEPVEHRSNRAGHPGTVEVWDMVAPE 554
            IRL  ++RST  +L A          A+ L A+N      S R G     E+W      
Sbjct: 279 MIRLEQNYRSTGGILKA----------ANALIANN------SGRLGK----ELW------ 312

Query: 555 TTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTIIEKGVERAVEPGDILVLVR 614
           T   E +    + A  E   A  V   I          ++++++G  R     +I +L R
Sbjct: 313 TDMGEGEPLTLYAAYNEHDEARYVVETI----------ESLVKQGNAR----NEIAILYR 358

Query: 615 KRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVLPEDDLSLAALLKS 674
             A   + +  E   R+ IP       R  +   +++ +A  R +    +D +L  ++  
Sbjct: 359 SNAQ--SRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINV 416

Query: 675 PLFNLTEDDVFEIAA-TRSEAESVWQRL------QVLSGEETSRLSIVTDKLRHFISLSK 727
           P   + E  V  I    R    S+W+ +      + L G   S L    + +    +   
Sbjct: 417 PPRGIGEKTVEAIREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVV 476

Query: 728 TATVHDFF------AAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTG----LPG 777
              +H         + ++T H   K   G  G    + L+E +S A + E T     L  
Sbjct: 477 DMPLHTMTQTTIEQSGLITYHQEEK---GEKGQARVENLEELVSAARNFESTDEDADLSP 533

Query: 778 LQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFVVDGGSKAFNHSHVPKL 837
           L AFL     ++ + + ++ +D   +++MT+H++KGLE P VF+V      F H    K+
Sbjct: 534 LSAFLGHASLEAGDTQADEHED--SIQLMTLHSAKGLEFPYVFLVGMEEGLFPH----KM 587

Query: 838 RFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRAADHLVV 893
              E          PG        R +EE          RRL YV +TRA   LV+
Sbjct: 588 SLEE----------PG--------RLEEE----------RRLAYVGITRAMRQLVM 615



 Score = 42.4 bits (98), Expect = 1e-07
 Identities = 37/142 (26%), Positives = 51/142 (35%), Gaps = 39/142 (27%)

Query: 38  VSANAGSGKTHVLTQRVIRLL-LAGCRPSAILCLTYTKAAASEMSSRVFDRLAEWATLPD 96
           V A AGSGKT VL  R+  L+ +    P +IL +T+T  AA+EM  R+   L        
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLG------- 82

Query: 97  SDLKDRITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTIHAFCEALLHQFPLEANVA 156
                                            P G+ + T H     LL     EA + 
Sbjct: 83  -------------------------------INPAGMWVGTFHGLAHRLLRAHWQEARLV 111

Query: 157 GHFSVLDDRAATTLLAEARRSL 178
            +F +LD      L+    R L
Sbjct: 112 QNFQILDSDDQQRLIKRVMREL 133