Pairwise Alignments

Query, 1185 a.a., ATP-dependant DNA helicase from Agrobacterium fabrum C58

Subject, 1224 a.a., Chi activated ATP-dependent DNA helicase and dsDNA/ssDNA exonuclease from Pseudomonas putida KT2440

 Score =  105 bits (261), Expect = 3e-26
 Identities = 141/531 (26%), Positives = 232/531 (43%), Gaps = 60/531 (11%)

Query: 375 FEDLKKQRSQLDFEDLIERAANLLNRDTAGAWVHYKLDQGIDHILVDEAQDTSPVQWSII 434
           FE  K++R+++ F+D++ R  + L  + AG  +   + +     L+DE QDT PVQ+ I 
Sbjct: 345 FEVEKRRRAEMGFDDMLVRLQHALASE-AGERLASLIREQFPVALIDEFQDTDPVQYGIF 403

Query: 435 QSLAADFFNGESARMGRRTLFAVGDEKQSIYSFQGARPERFSQERDETKRRVDQVEQAFH 494
           + +        S       LF +GD KQ+IY+F+GA    +   R  T  R+        
Sbjct: 404 ERIYQI-----SENRAETGLFMIGDPKQAIYAFRGADIYTYLAARRATSGRLHS------ 452

Query: 495 RIRLPLSFRSTEDVLAAVDQVFSDPKNASG-------LSADNEP---VEHRSNRAGHPGT 544
              L  ++RS++ ++AAV+QVF   +             AD+ P   +E R+   G    
Sbjct: 453 ---LDTNYRSSKAMVAAVNQVFLQAEAREAGRGAFLFREADDNPLPFIEVRAKGRGEQLL 509

Query: 545 VEVWDMVAPETTEDEEDWTAPFDALRESAPATIVARRIAARIADMIGNQTIIE-KGVERA 603
           ++     A +  + E +        R+   A+  +  +A       G       +G  RA
Sbjct: 510 IDGEVSAALQCWQLESEEPVSSSVYRQQMAASCASHIVALLNGGQQGTSGFRNAEGELRA 569

Query: 604 VEPGDILVLVR--KRAAFVNALTRELKRRKNIPVAGADRLRLTDHIAVQDLLALGRFVVL 661
             P DI +LVR    A  V A   EL  R+   V  +D+  +       DLLA  +    
Sbjct: 570 CLPSDIAILVRDGHEAQMVRA---ELAAREVRSVYLSDKDSVFAAQEAHDLLAWLKACAE 626

Query: 662 PEDDLSLAALLKSPLFNLTEDDVFEIAATRSEAESVWQR--LQVLSGEETSRLSIVTDKL 719
           P+ +     LLK+ L +LT           ++ E VW+   ++     +T +   V   L
Sbjct: 627 PDSE----RLLKAALASLTLGLSLAALDRLNQDERVWESWVMRFRLYRDTWQRQGVLPML 682

Query: 720 RHFISLSKTATVHDFF--AAVLTLHDGRKKFLGRLGNEASDVLDEFLSFALDHERTGLPG 777
           RH +        HDF     ++   DG +     L    +++L +  +  LD E+  +  
Sbjct: 683 RHLL--------HDFQLPRTLIRRSDGERVLTNLL--HLAELLQQ-AAGELDGEQALIRH 731

Query: 778 LQAFLSVLETDSPEVKREQDKDRGEVRIMTVHASKGLEAPVVFV-VDGGSKAFNHSHVPK 836
           L   L+       E     + D   V+++T+H SKGLE P+V++     SK  + S +P 
Sbjct: 732 LAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVYLPFICTSKPVDGSRLP- 790

Query: 837 LRFVEGDGDAFPVWLPGSGFSNHLIRSDEERLKTAAEDEYRRLLYVAMTRA 887
           L + + +G+A     P       + R+D+ERL   AED   RLLYVA+TRA
Sbjct: 791 LAWHDSEGNAHLTLTPD---QEQIERADDERL---AED--LRLLYVALTRA 833



 Score = 41.2 bits (95), Expect = 5e-07
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 13/131 (9%)

Query: 35  SAWVSANAGSGKTHVLTQRVIRLLLAG---------CRPSAILCLTYTKAAASEMSSRVF 85
           S  + A+AG+GKT  ++   +RL+L             P  IL +T+T AA  E+  R+ 
Sbjct: 16  SQLIEASAGTGKTFTISALYLRLILGHGGEQGFERELLPPQILVVTFTDAATKELRERIR 75

Query: 86  DRLAEWATLPDSDLKDR---ITTIEGKVPDRIKLAEARRLFAKALETPGGLKIQTIHAFC 142
            RLAE A     +L+     +  +    P       A RL   A++      + TIH +C
Sbjct: 76  ARLAEAARFFRGELEGADPLLHQLRDDYPQENWPRCAGRL-EIAVQWMDEAAVSTIHGWC 134

Query: 143 EALLHQFPLEA 153
           + +L +   ++
Sbjct: 135 QRMLREHAFDS 145