SEED Subsystem: DNA Repair Base Excision in Rhodanobacter sp. FW510-T8

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD OKGIIK_01670
DNA ligase (EC 6.5.1.2) OKGIIK_07500 ligA
  OKGIIK_12905 ligB
DNA polymerase I (EC 2.7.7.7) OKGIIK_10715
  OKGIIK_16785 polA
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) OKGIIK_13685
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) OKGIIK_07210
Endonuclease III (EC 4.2.99.18) OKGIIK_04675 nth
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) OKGIIK_07470 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) OKGIIK_13060 mutM
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) OKGIIK_06995 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 OKGIIK_12930 ung

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