SEED Subsystem: DNA Repair Base Excision in Rhodanobacter sp000427505 FW510-R12

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD LRK53_RS09920
DNA ligase (EC 6.5.1.2) LRK53_RS03765
  LRK53_RS11560
DNA polymerase I (EC 2.7.7.7) LRK53_RS01570
  LRK53_RS06075
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) LRK53_RS03005
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) LRK53_RS11260
  LRK53_RS14140
Endonuclease III (EC 4.2.99.18) LRK53_RS08200
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) LRK53_RS11530
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) LRK53_RS03605
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) LRK53_RS09835
  LRK53_RS18145
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 LRK53_RS03730

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