SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens GW456-L13

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD PfGW456L13_3783
DNA ligase (EC 6.5.1.2) PfGW456L13_1060
  PfGW456L13_4080
DNA polymerase I (EC 2.7.7.7) PfGW456L13_594
DNA polymerase II (EC 2.7.7.7) PfGW456L13_2472
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PfGW456L13_2021
  PfGW456L13_657
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) PfGW456L13_1355
  PfGW456L13_1877
  PfGW456L13_3368
Endonuclease III (EC 4.2.99.18) PfGW456L13_1753
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) PfGW456L13_1823
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PfGW456L13_979
Ku domain protein PfGW456L13_3026
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PfGW456L13_1730
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PfGW456L13_4530

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