SEED Subsystem: Choline and Betaine Uptake and Betaine Biosynthesis in Pseudomonas fluorescens GW456-L13

Experiments:

Role Gene Name  
Alcohol dehydrogenase GbsB (type III ), essential for the utilization of choline (EC 1.1.1.1) No genes
Betaine aldehyde dehydrogenase (EC 1.2.1.8) PfGW456L13_1083
Choline ABC transport system, ATP-binding protein OpuBA No genes
Choline ABC transport system, choline-binding protein OpuBC No genes
Choline ABC transport system, permease protein OpuBB No genes
Choline ABC transport system, permease protein OpuBD No genes
Choline binding protein A No genes
Choline binding protein D No genes
Choline dehydrogenase (EC 1.1.99.1) PfGW456L13_1082
  PfGW456L13_2692
  PfGW456L13_3441
  PfGW456L13_3561
Choline-sulfatase (EC 3.1.6.6) PfGW456L13_2749
  PfGW456L13_3280
  PfGW456L13_3780
  PfGW456L13_641
GbcA Glycine betaine demethylase subunit A PfGW456L13_1110
  PfGW456L13_1111
GbcB Glycine betaine demethylase subunit B PfGW456L13_1112
Glycine betaine ABC transport system permease protein No genes
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32) No genes
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC No genes
Glycine betaine ABC transport system, permease protein OpuAB No genes
Glycine betaine ABC transport system, permease/glycine betaine-binding protein OpuABC No genes
Glycine betaine transporter OpuD No genes
Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein PfGW456L13_4278
HTH-type transcriptional regulator BetI PfGW456L13_1084
  PfGW456L13_3621
High-affinity choline uptake protein BetT PfGW456L13_1085
  PfGW456L13_439
L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) PfGW456L13_1086
  PfGW456L13_3150
  PfGW456L13_5065
L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) PfGW456L13_1087
  PfGW456L13_3148
  PfGW456L13_3149
  PfGW456L13_5062
  PfGW456L13_5064
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) PfGW456L13_1088
  PfGW456L13_1096
  PfGW456L13_315
  PfGW456L13_3151
  PfGW456L13_3620
  PfGW456L13_5063
  PfGW456L13_642
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD No genes
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC No genes
Sarcosine oxidase alpha subunit (EC 1.5.3.1) PfGW456L13_1119
Sarcosine oxidase beta subunit (EC 1.5.3.1) PfGW456L13_1117
  PfGW456L13_1694
Sarcosine oxidase delta subunit (EC 1.5.3.1) PfGW456L13_1118
Sarcosine oxidase gamma subunit (EC 1.5.3.1) PfGW456L13_1120

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