SEED Subsystem: Valine degradation in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) GFF184
  GFF2812
  GFF3570
  GFF4195
  GFF517
  GFF589
3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) GFF1790
  GFF2068
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) GFF1075
Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) GFF1789
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC 1.2.4.4) GFF3459
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) GFF3459
Branched-chain amino acid aminotransferase (EC 2.6.1.42) GFF1936
Butyrate kinase (EC 2.7.2.7) No genes
Butyryl-CoA dehydrogenase (EC 1.3.99.2) GFF1286
  GFF1589
  GFF1590
  GFF1670
  GFF2314
  GFF2837
  GFF4773
  GFF4774
  GFF4799
  GFF4815
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.168) No genes
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (EC 1.8.1.4) No genes
Enoyl-CoA hydratase (EC 4.2.1.17) GFF1383
  GFF1591
  GFF2006
  GFF2039
  GFF2391
  GFF27
  GFF2812
  GFF2820
  GFF2845
  GFF3007
  GFF3344
  GFF4218
  GFF4249
  GFF4546
  GFF4769
  GFF4803
  GFF494
  GFF704
Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) No genes
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-) No genes
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) GFF1509
  GFF1788
  GFF2774
Predicted transcriptional regulator of leucine degradation pathway, MerR family No genes
Probable acyl-CoA dehydrogenase (EC 1.3.99.3) No genes
Transcriptional regulator BkdR of isoleucine and valine catabolism operon No genes
phosphotransbutyrylase (EC 2.3.1.19) No genes

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