SEED Subsystem: Serine-glyoxylate cycle in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) GFF2377
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) GFF4147
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) GFF85
Acetoacetyl-CoA reductase (EC 1.1.1.36) GFF605
Acetyl-CoA acetyltransferase (EC 2.3.1.9) GFF4817
  GFF606
Aconitate hydratase (EC 4.2.1.3) No genes
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) GFF536
Enolase (EC 4.2.1.11) GFF588
Formate--tetrahydrofolate ligase (EC 6.3.4.3) GFF2376
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) No genes
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) No genes
Isocitrate lyase (EC 4.1.3.1) No genes
Malate dehydrogenase (EC 1.1.1.37) GFF3177
  GFF4411
Malate synthase-related protein No genes
Malyl-CoA lyase (EC 4.1.3.24) GFF612
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) GFF1063
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) GFF3791
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) GFF3793
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) GFF3696
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) GFF1063
Methylmalonyl-CoA mutase (EC 5.4.99.2) GFF3155
  GFF3157
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) GFF3697
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) GFF4136
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) GFF3161
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) GFF3431
  GFF575
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes
Serine--pyruvate aminotransferase (EC 2.6.1.51) No genes
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) GFF2488
  GFF4064
  GFF780
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) GFF2487
  GFF4070
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) GFF2539
  GFF4409
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) GFF2538
  GFF4410
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) GFF1728
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) GFF1727
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein GFF3993
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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