SEED Subsystem: Polyhydroxybutyrate metabolism in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) GFF184
  GFF2812
  GFF3570
  GFF4195
  GFF517
  GFF589
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) No genes
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) GFF2521
  GFF2626
  GFF2627
  GFF2823
  GFF4016
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) GFF184
  GFF2812
3-ketoacyl-CoA thiolase (EC 2.3.1.16) GFF2377
Acetoacetyl-CoA reductase (EC 1.1.1.36) GFF605
Acetoacetyl-CoA synthetase (EC 6.2.1.16) No genes
Acetyl-CoA acetyltransferase (EC 2.3.1.9) GFF4817
  GFF606
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) No genes
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) No genes
D(-)-3-hydroxybutyrate oligomer hydrolase (EC 3.1.1.22) No genes
D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) GFF2516
  GFF2824
  GFF2850
  GFF3040
  GFF3769
D-beta-hydroxybutyrate permease GFF1328
  GFF1329
  GFF4354
Enoyl-CoA hydratase (EC 4.2.1.17) GFF1383
  GFF1591
  GFF2006
  GFF2039
  GFF2391
  GFF27
  GFF2812
  GFF2820
  GFF2845
  GFF3007
  GFF3344
  GFF4218
  GFF4249
  GFF4546
  GFF4769
  GFF4803
  GFF494
  GFF704
Intracellular PHB depolymerase (EC 3.1.1.-) GFF2286
  GFF4364
Poly(3-hydroxyalkanoate) depolymerase No genes
Polyhydroxyalkanoate granule-associated protein PhaF No genes
Polyhydroxyalkanoic acid synthase GFF1320
  GFF4328
Putative 3-hydroxyacyl-coa dehydrogenase No genes
Short chain fatty acids transporter No genes
polyhydroxyalkanoate granule-associated protein PhaI No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes

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