SEED Subsystem: Oxidative stress in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
Alkyl hydroperoxide reductase subunit C-like protein GFF1951
  GFF4044
  GFF407
Catalase (EC 1.11.1.6) GFF1756
  GFF2671
DNA binding protein starved cells-like peroxide resistance protein No genes
Fe2+/Zn2+ uptake regulation proteins No genes
Ferric uptake regulation protein No genes
Ferric uptake regulation protein FUR GFF3729
Ferroxidase (EC 1.16.3.1) GFF4037
  GFF899
Fumarate and nitrate reduction regulatory protein No genes
Heme oxygenase HemO, associated with heme uptake GFF4560
Hydrogen peroxide-inducible genes activator GFF1090
  GFF1755
  GFF1821
  GFF212
  GFF668
Iron-binding ferritin-like antioxidant protein GFF4037
  GFF899
Iron-responsive regulator Irr GFF1097
Manganese superoxide dismutase (EC 1.15.1.1) No genes
Metallothionein No genes
Nitrite-sensitive transcriptional repressor NsrR No genes
NnrS protein involved in response to NO GFF4731
Non-specific DNA-binding protein Dps GFF4037
  GFF899
Organic hydroperoxide resistance protein GFF4448
Organic hydroperoxide resistance transcriptional regulator GFF4449
Paraquat-inducible protein A No genes
Paraquat-inducible protein B No genes
Peroxidase (EC 1.11.1.7) No genes
Peroxidase/catalase HPI (EC 1.11.1.6) No genes
Peroxide stress regulator No genes
Peroxide stress regulator PerR, FUR family No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) GFF4286
Probable peroxiredoxin (EC 1.11.1.15) No genes
Redox-sensitive transcriptional activator SoxR No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein) No genes
Regulatory protein SoxS GFF1475
Rubrerythrin No genes
Superoxide dismutase (EC 1.15.1.1) No genes
Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1) GFF4559
Superoxide dismutase [Fe] (EC 1.15.1.1) GFF3389
Superoxide dismutase [Mn/Fe] (EC 1.15.1.1) No genes
Superoxide dismutase [Mn] (EC 1.15.1.1) No genes
Superoxide reductase (EC 1.15.1.2) No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-) No genes
Transcriptional regulator, Crp/Fnr family No genes
Transcriptional regulator, FUR family No genes
Zinc uptake regulation protein ZUR GFF3770
bacteriophytochrome heme oxygenase BphO No genes
superoxide dismutase [Fe-Zn] (EC 1.15.1.1) No genes
transcriptional regulator, Crp/Fnr family GFF2791
  GFF3783
  GFF3972
transcriptional regulator, Fur family No genes

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