SEED Subsystem: Nitrogen fixation in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
4Fe-4S ferredoxin, nitrogenase-associated GFF4585
  GFF4850
  GFF4865
AnfO protein, required for Mo- and V-independent nitrogenase No genes
AnfR protein, required for Mo- and V-independent nitrogenase No genes
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily GFF4861
Homocitrate synthase (EC 2.3.3.14) GFF4414
Homocitrate synthase alpha subunit (EC 2.3.3.14) No genes
Homocitrate synthase omega subunit (EC 2.3.3.14) No genes
Iron-sulfur cluster assembly scaffold protein NifU GFF4860
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis GFF4868
  GFF4890
NifB-domain protein, type 2 No genes
NifM protein No genes
NifT protein GFF4862
NifX-associated protein GFF4848
NifY protein No genes
NifZ protein GFF4869
  GFF4870
Nitrogenase (iron-iron) alpha chain (EC 1.18.6.1) No genes
Nitrogenase (iron-iron) beta chain (EC 1.18.6.1) No genes
Nitrogenase (iron-iron) delta chain (EC 1.18.6.1) No genes
Nitrogenase (iron-iron) reductase and maturation protein AnfH No genes
Nitrogenase (iron-iron) transcriptional regulator No genes
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) GFF4843
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) GFF4844
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH No genes
Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA GFF4584
Nitrogenase (vanadium-iron) alpha chain (EC 1.18.6.1) No genes
Nitrogenase (vanadium-iron) beta chain (EC 1.18.6.1) No genes
Nitrogenase (vanadium-iron) delta chain (EC 1.18.6.1) No genes
Nitrogenase (vanadium-iron) reductase and maturation protein VnfH No genes
Nitrogenase (vanadium-iron) transcriptional regulator VnfA No genes
Nitrogenase FeMo-cofactor carrier protein NifX GFF4847
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE GFF4845
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN GFF4846
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB GFF4864
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ GFF4851
Nitrogenase cofactor carrier protein NafY No genes
Nitrogenase stabilizing/protective protein NifW GFF4412
Nitrogenase vanadium-cofactor synthesis protein VnfE No genes
Nitrogenase vanadium-cofactor synthesis protein VnfN No genes
Nitrogenase vanadium-cofactor synthesis protein VnfX No genes
Nitrogenase vanadium-cofactor synthesis protein VnfY No genes
Nitrogenase-associated protein NifO GFF4418
Transcriptional repressor of nif and glnA operons No genes
probable iron binding protein from the HesB_IscA_SufA family in Nif operon GFF4859
  GFF4866

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