SEED Subsystem: Nitrate and nitrite ammonification in Xanthobacter sp. DMC5

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) GFF1980
  GFF1981
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) GFF1979
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein GFF1976
Nitrate ABC transporter, nitrate-binding protein GFF1917
  GFF1974
  GFF787
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein No genes
Nitrate/nitrite sensor protein (EC 2.7.3.-) No genes
Nitrate/nitrite transporter GFF2140
  GFF2355
  GFF4113
  GFF4740
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) GFF1978
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) No genes
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) GFF4739
Respiratory nitrate reductase beta chain (EC 1.7.99.4) GFF4738
Respiratory nitrate reductase delta chain (EC 1.7.99.4) GFF4737
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) GFF4736
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT GFF1916

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